X-Ray Diffraction data from Globin sensor domain of AfGcHK in complex with cyanide, source of 5OHE structure

Data DOI: 10.15785/SBGRID/776 | ID: 776

Publication DOI: 10.1074/jbc.M117.817023

5OHE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences

Release Date: 21 Apr 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/776

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/776 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/776 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/776 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/776 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 776 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Globin sensor domain of AfGcHK in complex with cyanide

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Bessy II, beamline 14.1

Data Creation Date:

18 May 2016

Related Datasets:

None


Cite this Dataset

Skalova, T; Kolenko, P; Martinkova, M; Stranava, M; Dohnalek, J. 2020. "X-Ray Diffraction data for: Globin sensor domain of AfGcHK in complex with cyanide. PDB Code 5OHE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/776.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Tereza SkalovaData Collector, DepositorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic
Jan DohnalekData CollectorInstitute of Biotechnology of the Czech Academy of Sciences, v.v.i.,Prumyslova 595, 252 50, Vestec, Czech Republic
Petr KolenkoData CollectorFNSPE, Czech Technical University in Prague, Brehova 7, Prague 1, 115 19 Czech Republic
Marketa MartinkovaData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague,Hlavova 8, 128 40 Praha, Czech Republic
Martin StranavaData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague,Hlavova 8, 128 40 Praha, Czech Republic
Jan DohnalekPIInstitute of Biotechnology of the Czech Academy of Sciences

Reprocessing Instructions

use all 1800 images

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.91841

Sweep:

SWEEP1

Files:

/programs/datagrid/776/h11_go_1_#####.cbf

Images:

1 - 1800

Beam:

(214.66, 213.11) -> (214.66, 213.25)

Distance:

375.75 -> 370.67

Spacegroup:

I 41 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.75 4.75 1.75
Low resolution limit 58.46 58.49 1.78
Completeness 99.9 100.0 98.8
Multiplicity 8.9 10.7 6.0
I/sigma 11.4 25.4 1.1
Rmerge 0.104 0.075 1.022
CC half 0.996 0.997 0.425
Anomalous completeness 97.8 99.8 89.4
Anomalous multiplicity 4.8 4.8 4.8
Cell 78.0 78.0 441.52 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.91841

Sweep:

SWEEP1

Files:

/programs/datagrid/776/h11_go_1_#####.cbf

Images:

1 - 1800

Beam:

(214.66, 213.11) -> (214.66, 213.3)

Distance:

375.75 -> 374.57

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.63 4.42 1.63
Low resolution limit 76.67 76.76 1.66
Completeness 99.4 100.0 92.4
Multiplicity 12.0 11.5 6.8
I/sigma 6.1 23.2 0.2
Rmerge 0.161 0.13 1.444
CC half 0.988 0.974 0.322
Anomalous completeness 99.1 100.0 91.2
Anomalous multiplicity 6.4 6.4 6.4
Cell 77.859 77.859 441.013 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.