Data DOI: 10.15785/SBGRID/776 | ID: 776
Publication DOI: 10.1074/jbc.M117.817023
5OHE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 21 Apr 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/776
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/776 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/776 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/776 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/776 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 776 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Globin sensor domain of AfGcHK in complex with cyanide
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Bessy II, beamline 14.1
Data Creation Date:
18 May 2016
Related Datasets:
None
Skalova, T; Kolenko, P; Martinkova, M; Stranava, M; Dohnalek, J. 2020. "X-Ray Diffraction data for: Globin sensor domain of AfGcHK in complex with cyanide. PDB Code 5OHE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/776.
native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Prumyslova 595, 252 50, Vestec, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i.,Prumyslova 595, 252 50, Vestec, Czech Republic |
| Petr Kolenko | Data Collector | FNSPE, Czech Technical University in Prague, Brehova 7, Prague 1, 115 19 Czech Republic |
| Marketa Martinkova | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague,Hlavova 8, 128 40 Praha, Czech Republic |
| Martin Stranava | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague,Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
use all 1800 images
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/776/h11_go_1_#####.cbf
Images:
1 - 1800
Beam:
(214.66, 213.11) -> (214.66, 213.25)
Distance:
375.75 -> 370.67
Spacegroup:
I 41 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.75 | 4.75 | 1.75 |
| Low resolution limit | 58.46 | 58.49 | 1.78 |
| Completeness | 99.9 | 100.0 | 98.8 |
| Multiplicity | 8.9 | 10.7 | 6.0 |
| I/sigma | 11.4 | 25.4 | 1.1 |
| Rmerge | 0.104 | 0.075 | 1.022 |
| CC half | 0.996 | 0.997 | 0.425 |
| Anomalous completeness | 97.8 | 99.8 | 89.4 |
| Anomalous multiplicity | 4.8 | 4.8 | 4.8 |
| Cell | 78.0 | 78.0 | 441.52 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/776/h11_go_1_#####.cbf
Images:
1 - 1800
Beam:
(214.66, 213.11) -> (214.66, 213.3)
Distance:
375.75 -> 374.57
Spacegroup:
P 4 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.42 | 1.63 |
| Low resolution limit | 76.67 | 76.76 | 1.66 |
| Completeness | 99.4 | 100.0 | 92.4 |
| Multiplicity | 12.0 | 11.5 | 6.8 |
| I/sigma | 6.1 | 23.2 | 0.2 |
| Rmerge | 0.161 | 0.13 | 1.444 |
| CC half | 0.988 | 0.974 | 0.322 |
| Anomalous completeness | 99.1 | 100.0 | 91.2 |
| Anomalous multiplicity | 6.4 | 6.4 | 6.4 |
| Cell | 77.859 | 77.859 | 441.013 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
