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X-Ray Diffraction data from Mouse surfactant protein B, N-terminal domain (Y59A/H79A mutant) with bound lipid, source of 6W1B structure

Data DOI: 10.15785/SBGRID/773 | ID: 773

Publication DOI: 10.1016/j.molcel.2020.10.042

6W1B Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rapoport Laboratory, Harvard Medical School

Release Date: Nov. 17, 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/773

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/773 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/773 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/773 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/773 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 773 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Mouse surfactant protein B, N-terminal domain (Y59A/H79A mutant) with bound lipid

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS 24-ID-C

Data Creation Date:

April 17, 2018

Related Datasets:

None


Cite this Dataset

Bodnar, NO; Wu, X; Rapoport, TA. 2020. "X-Ray Diffraction data for: Mouse surfactant protein B, N-terminal domain (Y59A/H79A mutant) with bound lipid. PDB Code 6W1B", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/773.

Download Citation

Dataset Description

Native dataset, 0.979 angstroms

Project Members

Name Additional Roles Affiliation While Working on the Project
Nicholas O BodnarDepositorHMS
Tom A RapoportHMS
Xudong WuData CollectorHMS
Tom RapoportPIHarvard Medical School

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/773/puck1_slot1_1_####.cbf

Images:

1 - 1800

Beam:

(216.55, 223.03) -> (216.55, 223.37)

Distance:

400.0 -> 400.13

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.32 6.28 2.32
Low resolution limit 30.76 30.76 2.36
Completeness 94.3 88.4 96.7
Multiplicity 3.6 3.6 3.6
I/sigma 8.4 21.9 0.8
Rmerge 0.056 0.038 1.679
CC half 0.997 0.997 0.396
Anomalous completeness 85.4 76.0 90.5
Anomalous multiplicity 1.9 1.9 1.9
Cell 73.49 74.59 95.623 106.748 106.302 105.13

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9791

Sweep:

SWEEP1

Files:

/programs/datagrid/773/puck1_slot1_1_####.cbf

Images:

1 - 1800

Beam:

(216.55, 223.03) -> (216.55, 223.34)

Distance:

400.0 -> 401.4

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.26 6.15 2.26
Low resolution limit 84.87 84.93 2.3
Completeness 99.5 99.3 98.4
Multiplicity 6.9 6.9 6.3
I/sigma 9.3 53.5 0.2
Rmerge 0.081 0.047 6.357
CC half 0.998 0.998 0.251
Anomalous completeness 98.7 98.9 96.7
Anomalous multiplicity 3.5 3.5 3.5
Cell 90.427 169.736 73.758 90.0 126.88 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.