Data DOI: 10.15785/SBGRID/756 | ID: 756
Publication DOI: 10.1074/jbc.RA120.014177
6VS7 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 1 Sep 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/756
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/756 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/756 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/756 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/756 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 756 ; shasum -c files.sha'
Storage requirements: 23G
Biological Sample:
Streptococcus sanguinis strain SK1 adhesin
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
LSCAT ID-F
Data Creation Date:
17 Aug 2017
Related Datasets:
None
Stubbs, HE; Iverson, T. 2020. "X-Ray Diffraction data for: Streptococcus sanguinis strain SK1 adhesin. PDB Code 6VS7", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/756.
native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Haley E Stubbs | Data Collector, Depositor | Vanderbilt University |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/756/Sk1_3_1_3_7.###
Images:
1 - 720
Beam:
(147.56, 148.0) -> (147.56, 148.1)
Distance:
250.0 -> 251.27
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 44.89 | 44.9 | 1.9 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 14.6 | 12.9 | 14.9 |
| I/sigma | 11.1 | 36.1 | 1.0 |
| Rmerge | 0.172 | 0.048 | 3.256 |
| CC half | 0.999 | 0.999 | 0.303 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.7 | 7.7 | 7.7 |
| Cell | 82.4 | 270.28 | 47.59 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/756/Sk1_3_1_3_7.###
Images:
1 - 720
Beam:
(147.56, 148.0) -> (147.56, 148.11)
Distance:
250.0 -> 250.35
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.07 | 1.87 |
| Low resolution limit | 45.04 | 45.06 | 1.9 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 14.6 | 12.9 | 14.8 |
| I/sigma | 11.1 | 36.1 | 1.0 |
| Rmerge | 0.172 | 0.048 | 3.247 |
| CC half | 0.999 | 0.998 | 0.311 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 7.7 | 7.7 | 7.7 |
| Cell | 82.4 | 270.27 | 47.59 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/756/Sk1_3_1_3_7.###
Images:
1 - 720
Beam:
(147.56, 148.0) -> (147.56, 148.19)
Distance:
250.0 -> 251.44
Spacegroup:
P 2 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.54 | 4.18 | 1.54 |
| Low resolution limit | 135.73 | 136.26 | 1.57 |
| Completeness | 94.8 | 100.0 | 61.6 |
| Multiplicity | 11.2 | 14.1 | 4.3 |
| I/sigma | 11.7 | 30.4 | 33.7 |
| Rmerge | 0.127 | 0.1 | 0.066 |
| CC half | 0.889 | 0.996 | 0.209 |
| Anomalous completeness | 94.3 | 100.0 | 59.1 |
| Anomalous multiplicity | 5.8 | 5.8 | 5.8 |
| Cell | 47.768 | 82.694 | 271.457 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
