X-Ray Diffraction data from Streptococcus sanguinis strain SK1 with 3sln, source of 6VT2 structure

Data DOI: 10.15785/SBGRID/755 | ID: 755

Publication DOI: 10.1074/jbc.RA120.014177

6VT2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: 1 Sep 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/755

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/755 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/755 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/755 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/755 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 755 ; shasum -c files.sha'

Storage requirements: 7.0G

Biological Sample:

Streptococcus sanguinis strain SK1 with 3sln

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

LSCAT ID-F

Data Creation Date:

5 Dec 2017

Related Datasets:

None


Cite this Dataset

Stubbs, HE; Iverson, T. 2020. "X-Ray Diffraction data for: Streptococcus sanguinis strain SK1 with 3sln. PDB Code 6VT2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/755.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Haley E StubbsData Collector, DepositorVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/755/SK1_25_17_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.85)

Distance:

449.34 -> 449.02

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.21 1.92
Low resolution limit 45.17 45.19 1.95
Completeness 92.0 99.0 59.4
Multiplicity 5.8 5.6 3.8
I/sigma 12.2 30.3 1.1
Rmerge 0.096 0.037 1.913
CC half 0.998 0.999 0.39
Anomalous completeness 89.9 96.9 56.2
Anomalous multiplicity 3.1 3.1 3.1
Cell 81.6 271.05 46.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/755/SK1_25_17_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.84)

Distance:

449.34 -> 448.54

Spacegroup:

P 21 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.21 1.92
Low resolution limit 45.17 45.19 1.95
Completeness 92.0 99.0 59.4
Multiplicity 5.8 5.6 3.8
I/sigma 12.2 30.3 1.1
Rmerge 0.095 0.037 1.915
CC half 0.998 0.998 0.399
Anomalous completeness 90.0 96.9 56.2
Anomalous multiplicity 3.1 3.1 3.1
Cell 81.6 271.05 46.89 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/755/SK1_25_17_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.85)

Distance:

449.34 -> 448.43

Spacegroup:

P 2 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.9 5.16 1.9
Low resolution limit 46.85 46.87 1.93
Completeness 91.1 99.3 55.8
Multiplicity 5.9 6.0 3.7
I/sigma 6.0 29.6 0.2
Rmerge 0.126 0.057 1.469
CC half 0.989 0.987 0.278
Anomalous completeness 90.1 99.5 53.4
Anomalous multiplicity 3.1 3.1 3.1
Cell 46.854 81.505 271.0 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.