Data DOI: 10.15785/SBGRID/748 | ID: 748
6VAX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: Sept. 1, 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/748
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/748 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/748 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/748 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/748 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 748 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Human SDHA-SDHAF2 complex
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS BEAMLINE 21-ID-F
Data Creation Date:
Aug. 5, 2018
Related Datasets:
None
Sharma, P; Cecchini, G; Iverson, TM.; Maklashina, E; Iverson, T. 2020. "X-Ray Diffraction data for: Human SDHA-SDHAF2 complex. PDB Code 6VAX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/748.
Native dataset at 2.4 A resolution.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Pankaj Sharma | Data Collector, Depositor | Department of Pharmacology, Vanderbilt University |
| Gary Cecchini | Department of Biochemistry & Biophysics, University of California, San Francisco, CA | |
| T. M. Iverson | Department of Pharmacology, Vanderbilt University | |
| Elena Maklashina | Department of Biochemistry & Biophysics, University of California, San Francisco, CA | |
| Tina Iverson | PI | Vanderbilt University |
This dataset was indexed in space group C121. The dataset contains 360 frames which were processed with HKL2000 at 2.4A resolution.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/748/sdh6_1min.###
Images:
1 - 360
Beam:
(147.54, 148.13) -> (147.54, 148.02)
Distance:
275.0 -> 274.84
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.23 | 6.05 | 2.23 |
| Low resolution limit | 65.59 | 65.62 | 2.27 |
| Completeness | 99.4 | 98.5 | 99.6 |
| Multiplicity | 7.4 | 6.5 | 7.6 |
| I/sigma | 6.5 | 21.6 | 0.9 |
| Rmerge | 0.111 | 0.038 | 2.121 |
| CC half | 0.999 | 0.998 | 0.413 |
| Anomalous completeness | 98.4 | 95.6 | 99.4 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 126.91 | 69.02 | 211.12 | 90.0 | 93.19 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/748/sdh6_1min.###
Images:
1 - 360
Beam:
(147.54, 148.13) -> (147.54, 148.02)
Distance:
275.0 -> 275.0
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.23 | 6.05 | 2.23 |
| Low resolution limit | 78.9 | 78.95 | 2.27 |
| Completeness | 99.4 | 98.5 | 99.6 |
| Multiplicity | 7.4 | 6.5 | 7.6 |
| I/sigma | 6.5 | 21.6 | 0.9 |
| Rmerge | 0.111 | 0.038 | 2.123 |
| CC half | 0.998 | 0.998 | 0.422 |
| Anomalous completeness | 98.4 | 95.7 | 99.4 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 126.91 | 69.02 | 211.13 | 90.0 | 93.19 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/748/sdh6_1min.###
Images:
1 - 360
Beam:
(147.54, 148.13) -> (147.54, 148.11)
Distance:
275.0 -> 275.63
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.87 | 5.08 | 1.87 |
| Low resolution limit | 126.93 | 127.23 | 1.9 |
| Completeness | 99.2 | 99.9 | 90.6 |
| Multiplicity | 7.3 | 7.5 | 4.7 |
| I/sigma | 4.7 | 34.4 | 0.7 |
| Rmerge | 0.131 | 0.05 | 0.974 |
| CC half | 0.955 | 0.961 | 0.499 |
| Anomalous completeness | 99.2 | 100.0 | 89.8 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 211.49 | 69.108 | 127.128 | 90.0 | 93.174 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
