Data DOI: 10.15785/SBGRID/724 | ID: 724
Publication DOI: 10.1107/S1399004714027928
4QKJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 1 Oct 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/724
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/724 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/724 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/724 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/724 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 724 ; shasum -c files.sha'
Storage requirements: 6.4G
Biological Sample:
Glycosylated form of human LLT1, a ligand for NKR-P1, in this structure forming hexamers
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Bessy 14.1
Data Creation Date:
24 Nov 2011
Related Datasets:
None
Skalova, T; Blaha, J; Duskova, J; Harlos, K; Hasek, J; Koval, T; Stransky, J; Vanek, O; Dohnalek, J. 2019. "X-Ray Diffraction data for: Glycosylated form of human LLT1, a ligand for NKR-P1, in this structure forming hexamers. PDB Code 4QKJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/724.
X-Ray Diffraction data from glycosylated form of human LLT1, a ligand for NKR-P1, in this structure forming hexamers, source of 4QKJ structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Jan Blaha | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Jarmila Duskova | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Karl Harlos | Data Collector | Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, England |
| Jindrich Hasek | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Tomas Koval | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic |
| Jan Stransky | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Ondrej Vanek | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
used all 360 images
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/724/LLT1_C2_1_go_1_####.img
Images:
1 - 360
Beam:
(111.55, 111.55) -> (111.55, 111.53)
Distance:
288.06 -> 288.83
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.18 | 5.9 | 2.18 |
| Low resolution limit | 26.11 | 26.11 | 2.22 |
| Completeness | 94.8 | 100.0 | 66.7 |
| Multiplicity | 18.8 | 17.1 | 12.4 |
| I/sigma | 14.7 | 46.3 | 0.5 |
| Rmerge | 0.143 | 0.045 | 5.673 |
| CC half | 0.999 | 0.999 | 0.238 |
| Anomalous completeness | 94.1 | 100.0 | 67.0 |
| Anomalous multiplicity | 10.6 | 10.6 | 10.6 |
| Cell | 70.22 | 70.22 | 101.92 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.91841
Sweep:
SWEEP1
Files:
/programs/datagrid/724/LLT1_C2_1_go_1_####.img
Images:
1 - 360
Beam:
(111.55, 111.55) -> (111.55, 111.49)
Distance:
288.06 -> 287.96
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.17 | 5.89 | 2.17 |
| Low resolution limit | 52.22 | 52.24 | 2.21 |
| Completeness | 94.4 | 100.0 | 65.3 |
| Multiplicity | 18.8 | 16.9 | 12.0 |
| I/sigma | 14.6 | 45.5 | 0.5 |
| Rmerge | 0.143 | 0.045 | 5.308 |
| CC half | 0.999 | 0.999 | 0.292 |
| Anomalous completeness | 93.6 | 100.0 | 64.5 |
| Anomalous multiplicity | 10.6 | 10.6 | 10.6 |
| Cell | 70.22 | 70.22 | 101.92 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
