X-Ray Diffraction data from Dimeric form of human LLT1, a ligand for NKR-P1, source of 4QKI structure

Data DOI: 10.15785/SBGRID/723 | ID: 723

Publication DOI: 10.1107/S1399004714027928

4QKI Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences

Release Date: 1 Oct 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/723

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/723 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/723 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/723 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/723 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 723 ; shasum -c files.sha'

Storage requirements: 2.1G

Biological Sample:

Dimeric form of human LLT1, a ligand for NKR-P1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Diamond I02

Data Creation Date:

30 Jun 2012

Related Datasets:

None


Cite this Dataset

Skalova, T; Blaha, J; Duskova, J; Harlos, K; Hasek, J; Koval, T; Stransky, J; Vanek, O; Dohnalek, J. 2019. "X-Ray Diffraction data for: Dimeric form of human LLT1, a ligand for NKR-P1. PDB Code 4QKI", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/723.

Download Citation

Dataset Description

X-Ray Diffraction data from dimeric form of human LLT1, a ligand for NKR-P1, source of 4QKI structure

Project Members

Name Additional Roles Affiliation While Working on the Project
Tereza SkalovaData Collector, DepositorInstitute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic
Jan BlahaData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic
Jan DohnalekData CollectorInstitute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic
Jarmila DuskovaData CollectorInstitute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic
Karl HarlosData CollectorDivision of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, England
Jindrich HasekData CollectorInstitute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic
Tomas KovalData CollectorInstitute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic
Jan StranskyData CollectorInstitute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic
Ondrej VanekData CollectorDepartment of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic
Jan DohnalekPIInstitute of Biotechnology of the Czech Academy of Sciences

Reprocessing Instructions

used all 900 images

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.92

Sweep:

SWEEP1

Files:

/programs/datagrid/723/425283-F10-x1_M5S1_7_####.cbf

Images:

1 - 900

Beam:

(144.39, 126.12) -> (144.39, 126.07)

Distance:

251.94 -> 251.32

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.5 4.07 1.5
Low resolution limit 74.06 74.15 1.53
Completeness 79.6 100.0 28.2
Multiplicity 6.0 6.1 3.0
I/sigma 8.2 40.8 0.2
Rmerge 0.074 0.046 0.944
CC half 0.998 0.998 0.335
Anomalous completeness 78.0 98.9 26.3
Anomalous multiplicity 3.2 3.2 3.2
Cell 51.236 54.087 74.063 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.