Data DOI: 10.15785/SBGRID/722 | ID: 722
Publication DOI: 10.1107/S1399004714027928
4QKH Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 1 Oct 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/722
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/722 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/722 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/722 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/722 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 722 ; shasum -c files.sha'
Storage requirements: 4.2G
Biological Sample:
Dimeric form of human LLT1, a ligand for NKR-P1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Diamond I04-1
Data Creation Date:
30 Jun 2012
Related Datasets:
None
Skalova, T; Blaha, J; Duskova, J; Harlos, K; Hasek, J; Koval, T; Stransky, J; Vanek, O; Dohnalek, J. 2019. "X-Ray Diffraction data for: Dimeric form of human LLT1, a ligand for NKR-P1. PDB Code 4QKH", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/722.
X-Ray Diffraction data from dimeric form of human LLT1, a ligand for NKR-P1, source of 4QKH structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Jan Blaha | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Jarmila Duskova | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Karl Harlos | Data Collector | Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, England |
| Jindrich Hasek | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Tomas Koval | Data Collector | Institute of Macromolecular Chemistry, Academy of Sciences of the Czech Republic, Heyrovskeho nam. 2, 162 06 Praha 6, Czech Republic |
| Jan Stransky | Data Collector | Institute of Biotechnology, Academy of Sciences of the Czech Republic, v.v.i., Videnska 1083, 142 20 Praha 4, Czech Republic |
| Ondrej Vanek | Data Collector | Department of Biochemistry, Faculty of Science, Charles University Prague, Hlavova 8, 128 40 Praha, Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
used all 1800 images
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.92
Sweep:
SWEEP2
Files:
/programs/datagrid/722/425283-F10-x1_M5S1_6_####.cbf
Images:
1 - 900
Beam:
(144.39, 126.12) -> (144.39, 126.11)
Distance:
251.94 -> 249.62
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.57 | 4.26 | 1.57 |
| Low resolution limit | 47.2 | 47.22 | 1.6 |
| Completeness | 86.0 | 100.0 | 40.6 |
| Multiplicity | 9.4 | 11.8 | 3.8 |
| I/sigma | 18.1 | 55.7 | 0.8 |
| Rmerge | 0.059 | 0.036 | 1.308 |
| CC half | 0.999 | 0.999 | 0.373 |
| Anomalous completeness | 84.9 | 99.6 | 39.5 |
| Anomalous multiplicity | 5.0 | 5.0 | 5.0 |
| Cell | 51.11 | 57.68 | 82.11 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
