Data DOI: 10.15785/SBGRID/72 | ID: 72
Publication DOI: 10.1093/nar/gkv321
4WUL Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shamoo Laboratory, Rice University
Release Date: 10 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/72
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/72 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/72 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/72 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/72 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 72 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Crystal structures of the LiaR DNA binding domain with secondary DNA target sequence
Dataset Type:
X-Ray Diffraction
Subject Composition:
DNA, Protein
Collection Facility:
APS BEAMLINE 21-ID-D
Data Creation Date:
19 Apr 2014
Related Datasets:
None
Davlieva, M; Shamoo, Y; Shamoo, Y. 2015. "X-Ray Diffraction data for: Crystal structures of the LiaR DNA binding domain with secondary DNA target sequence. PDB Code 4WUL", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/72.
Native data sets
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Milya Davlieva | Data Collector, Depositor | Department of BioSciences, Rice University, Houston, TX 77005, USA |
| Yousif Shamoo | Data Collector | Department of BioSciences, Rice University, Houston, TX 77005, USA |
| Yousif Shamoo | PI | Rice University |
This data set was indexed in space group P62 and was processed with HKL2000 at 2.4 A
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/72/data2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.92)
Distance:
300.0 -> 300.51
Spacegroup:
P 62
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.07 | 5.62 | 2.07 |
| Low resolution limit | 56.85 | 56.87 | 2.11 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 21.8 | 19.5 | 17.0 |
| I/sigma | 20.1 | 56.2 | 1.0 |
| Rmerge | 0.1 | 0.042 | 3.661 |
| CC half | 0.999 | 0.999 | 0.343 |
| Anomalous completeness | 100.0 | 99.7 | 100.0 |
| Anomalous multiplicity | 11.3 | 11.3 | 11.3 |
| Cell | 113.7 | 113.7 | 48.22 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/72/data2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.92)
Distance:
300.0 -> 300.4
Spacegroup:
P 62
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.06 | 5.59 | 2.06 |
| Low resolution limit | 56.85 | 56.87 | 2.1 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 21.7 | 19.5 | 16.4 |
| I/sigma | 19.8 | 56.2 | 0.9 |
| Rmerge | 0.1 | 0.042 | 3.793 |
| CC half | 1.0 | 0.999 | 0.281 |
| Anomalous completeness | 100.0 | 99.8 | 100.0 |
| Anomalous multiplicity | 11.2 | 11.2 | 11.2 |
| Cell | 113.7 | 113.7 | 48.22 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/72/data2.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 150.0)
Distance:
300.0 -> 300.29
Spacegroup:
P 6
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.84 | 5.0 | 1.84 |
| Low resolution limit | 56.92 | 56.95 | 1.88 |
| Completeness | 99.6 | 100.0 | 94.6 |
| Multiplicity | 18.6 | 21.5 | 6.3 |
| I/sigma | 10.0 | 55.0 | 3.4 |
| Rmerge | 0.126 | 0.067 | 0.749 |
| CC half | 0.985 | 0.998 | 0.408 |
| Anomalous completeness | 99.5 | 100.0 | 93.8 |
| Anomalous multiplicity | 9.5 | 9.5 | 9.5 |
| Cell | 113.848 | 113.848 | 48.297 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
