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X-Ray Diffraction data from Human Nudt12 in complex with Cd and 7-methyl GTP, source of 6SCX structure

Data DOI: 10.15785/SBGRID/716 | ID: 716

Publication DOI: 10.1016/j.celrep.2019.11.108

6SCX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

McCarthy Laboratory, EMBL - Grenoble

Release Date: Jan. 7, 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/716

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/716 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/716 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/716 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/716 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 716 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

Human Nudt12 in complex with Cd and 7-methyl GTP

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

PROXIMA 2, SOLEIL, Gif-sur-Yvette, France.

Data Creation Date:

July 27, 2019

Related Datasets:

None


Cite this Dataset

McCarthy, AA. 2020. "X-Ray Diffraction data for: Human Nudt12 in complex with Cd and 7-methyl GTP. PDB Code 6SCX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/716.

Download Citation

Dataset Description

Data collected from a single crystal using a continuous helical scan data collection method with 1800 frames in total (0.1s exposure and 0.1 degree rotation)

Project Members

Name Additional Roles Affiliation While Working on the Project
Andrew A McCarthyData Collector, DepositorEMBL-Grenoble
Andrew McCarthyPIEMBL - Grenoble

Reprocessing Instructions

Processed with autoPROC from Global Phasing incorporating STARANISO using all data

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.98011

Sweep:

SWEEP1

Files:

/programs/datagrid/716/KM_Cdm7G_x15_1_master.h5

Images:

1 - 1800

Beam:

(129.86, 108.09) -> (129.86, 108.23)

Distance:

317.67 -> 319.66

Spacegroup:

R 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.0 8.14 3.0
Low resolution limit 115.5 115.59 3.05
Completeness 100.0 100.0 99.0
Multiplicity 10.4 9.8 10.8
I/sigma 6.3 49.4 0.1
Rmerge 0.157 0.052 4.406
CC half 0.925 0.889 0.177
Anomalous completeness 99.9 100.0 99.0
Anomalous multiplicity 5.4 5.4 5.4
Cell 231.001 231.001 159.552 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.