Data DOI: 10.15785/SBGRID/716 | ID: 716
Publication DOI: 10.1016/j.celrep.2019.11.108
6SCX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
McCarthy Laboratory, EMBL - Grenoble
Release Date: 7 Jan 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/716
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/716 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/716 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/716 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/716 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 716 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
Human Nudt12 in complex with Cd and 7-methyl GTP
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
PROXIMA 2, SOLEIL, Gif-sur-Yvette, France.
Data Creation Date:
27 Jul 2019
Related Datasets:
None
McCarthy, AA. 2020. "X-Ray Diffraction data for: Human Nudt12 in complex with Cd and 7-methyl GTP. PDB Code 6SCX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/716.
Data collected from a single crystal using a continuous helical scan data collection method with 1800 frames in total (0.1s exposure and 0.1 degree rotation)
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Andrew A McCarthy | Data Collector, Depositor | EMBL-Grenoble |
| Andrew McCarthy | PI | EMBL - Grenoble |
Processed with autoPROC from Global Phasing incorporating STARANISO using all data
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.98011
Sweep:
SWEEP1
Files:
/programs/datagrid/716/KM_Cdm7G_x15_1_master.h5
Images:
1 - 1800
Beam:
(129.86, 108.09) -> (129.86, 108.23)
Distance:
317.67 -> 319.66
Spacegroup:
R 3 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.0 | 8.14 | 3.0 |
| Low resolution limit | 115.5 | 115.59 | 3.05 |
| Completeness | 100.0 | 100.0 | 99.0 |
| Multiplicity | 10.4 | 9.8 | 10.8 |
| I/sigma | 6.3 | 49.4 | 0.1 |
| Rmerge | 0.157 | 0.052 | 4.406 |
| CC half | 0.925 | 0.889 | 0.177 |
| Anomalous completeness | 99.9 | 100.0 | 99.0 |
| Anomalous multiplicity | 5.4 | 5.4 | 5.4 |
| Cell | 231.001 | 231.001 | 159.552 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
