Data DOI: 10.15785/SBGRID/715 | ID: 715
Publication DOI: 10.1074/jbc.RA119.011574
6OTD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Dohnalek Laboratory, Institute of Biotechnology of the Czech Academy of Sciences
Release Date: 7 Feb 2020
1. If this dataset is locally available, it should be accessable at /programs/datagrid/715
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/715 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/715 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/715 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/715 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 715 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
globin domain of AfGcHK in monomeric form, with imidazole
Dataset Type:
X-Ray Diffraction
Subject Composition:
Ligand, Protein
Collection Facility:
Diamond I02
Data Creation Date:
27 Nov 2015
Related Datasets:
None
Skalova, T; Blaha, J; Harlos, K; Kolenko, P; Lengalova, A; Martinkova, M; Stranava, M; Dohnalek, J. 2020. "X-Ray Diffraction data for: globin domain of AfGcHK in monomeric form, with imidazole. PDB Code 6OTD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/715.
X-ray diffraction data of globin domain of AfGcHK in monomeric form, with imidazole, source of 6OTD structure
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tereza Skalova | Data Collector, Depositor | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Biocev, Vestec, 252 50 Czech Republic |
| Jan Blaha | Data Collector | Department of Biochemistry, Faculty of Science, Charles University, Prague 2, 128 43 Czech Republic |
| Jan Dohnalek | Data Collector | Institute of Biotechnology of the Czech Academy of Sciences, v.v.i., Biocev, Vestec, 252 50 Czech Republic |
| Karl Harlos | Data Collector | Division of Structural Biology, The Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, OX3 7BN Oxford, United Kingdom |
| Petr Kolenko | Data Collector | FNSPE, Czech Technical University in Prague, Brehova 7, Prague 1, 115 19 Czech Republic |
| Alzbeta Lengalova | Data Collector | Department of Biochemistry, Faculty of Science, Charles University, Prague 2, 128 43 Czech Republic |
| Marketa Martinkova | Data Collector | Department of Biochemistry, Faculty of Science, Charles University, Prague 2, 128 43 Czech Republic |
| Martin Stranava | Data Collector | Department of Biochemistry, Faculty of Science, Charles University, Prague 2, 128 43 Czech Republic |
| Jan Dohnalek | PI | Institute of Biotechnology of the Czech Academy of Sciences |
used only images 1100-1800 plus 3000-3600
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97
Sweep:
SWEEP1
Files:
/programs/datagrid/715/594477_H4_X_1_2_####.cbf
Images:
1 - 3600
Beam:
(220.0, 212.48) -> (220.0, 212.38)
Distance:
350.03 -> 350.52
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.42 | 1.63 |
| Low resolution limit | 41.31 | 41.33 | 1.66 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 34.4 | 31.0 | 17.9 |
| I/sigma | 20.8 | 63.0 | 0.7 |
| Rmerge | 0.099 | 0.049 | 4.604 |
| CC half | 1.0 | 1.0 | 0.318 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 18.8 | 18.8 | 18.8 |
| Cell | 69.66 | 69.66 | 113.39 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97
Sweep:
SWEEP1
Files:
/programs/datagrid/715/594477_H4_X_1_2_####.cbf
Images:
1 - 3600
Beam:
(220.0, 212.48) -> (220.0, 212.41)
Distance:
350.03 -> 354.96
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.63 | 4.42 | 1.63 |
| Low resolution limit | 53.26 | 53.29 | 1.66 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 34.4 | 31.0 | 17.9 |
| I/sigma | 20.9 | 63.1 | 0.7 |
| Rmerge | 0.099 | 0.049 | 4.613 |
| CC half | 1.0 | 1.0 | 0.333 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 18.8 | 18.8 | 18.8 |
| Cell | 69.66 | 69.66 | 113.39 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97
Sweep:
SWEEP1
Files:
/programs/datagrid/715/594477_H4_X_1_2_####.cbf
Images:
1 - 3600
Beam:
(220.0, 212.48) -> (220.0, 212.36)
Distance:
350.03 -> 351.31
Spacegroup:
P 61 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.57 | 4.26 | 1.57 |
| Low resolution limit | 60.39 | 60.44 | 1.6 |
| Completeness | 100.0 | 100.0 | 95.8 |
| Multiplicity | 32.3 | 32.8 | 12.9 |
| I/sigma | 7.9 | 46.3 | 0.1 |
| Rmerge | 0.124 | 0.076 | 5.076 |
| CC half | 0.999 | 0.999 | 0.372 |
| Anomalous completeness | 99.8 | 100.0 | 95.8 |
| Anomalous multiplicity | 17.6 | 17.6 | 17.6 |
| Cell | 69.733 | 69.733 | 113.443 | 90.0 | 90.0 | 120.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
