X-Ray Diffraction data from RNA helix with uridine cross-strand stacking, source of 6E7L structure

Data DOI: 10.15785/SBGRID/712 | ID: 712

Publication DOI: 10.1107/S2053230X19012172

6E7L Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Butcher Laboratory, University of Wisconsin-Madison

Release Date: Sept. 13, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/712

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/712 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/712 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/712 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/712 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 712 ; shasum -c files.sha'

Storage requirements: 31G

Biological Sample:

RNA helix with uridine cross-strand stacking

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

APS 24-ID-E, NE-CAT

Data Creation Date:

March 22, 2018

Related Datasets:

None


Cite this Dataset

Montemayor, EJ; Butcher, SE. 2019. "X-Ray Diffraction data for: RNA helix with uridine cross-strand stacking. PDB Code 6E7L", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/712.

Download Citation

Dataset Description

RNA helix with uridine cross-strand stacking

Project Members

Name Additional Roles Affiliation While Working on the Project
Eric J MontemayorData Collector, DepositorUniversity of Wisconsin-Madison
Samuel E Butcher, PIUniversity of Wisconsin-Madison

Reprocessing Instructions

processed with XDS and aimless. XDS.INP from file in included here

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/712/h8_1_######.cbf

Images:

1 - 1800

Beam:

(163.27, 154.66) -> (163.27, 154.71)

Distance:

275.0 -> 276.49

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.56 6.92 2.56
Low resolution limit 28.56 28.56 2.6
Completeness 100.0 100.0 100.0
Multiplicity 24.1 19.4 25.9
I/sigma 20.1 53.8 0.7
Rmerge 0.099 0.034 3.903
CC half 1.0 1.0 0.394
Anomalous completeness 99.8 100.0 100.0
Anomalous multiplicity 14.2 14.2 14.2
Cell 42.04 42.04 77.85 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/712/h8_1_######.cbf

Images:

1 - 1800

Beam:

(163.27, 154.66) -> (163.27, 154.7)

Distance:

275.0 -> 276.56

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.51 6.81 2.51
Low resolution limit 42.04 42.05 2.55
Completeness 100.0 100.0 100.0
Multiplicity 24.3 19.1 26.7
I/sigma 19.1 53.0 0.7
Rmerge 0.1 0.034 4.546
CC half 1.0 1.0 0.1
Anomalous completeness 99.8 100.0 99.0
Anomalous multiplicity 14.3 14.3 14.3
Cell 42.04 42.04 77.86 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/712/h8_1_######.cbf

Images:

1 - 1800

Beam:

(163.27, 154.66) -> (163.27, 154.69)

Distance:

275.0 -> 275.63

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.38 6.46 2.38
Low resolution limit 77.78 77.82 2.42
Completeness 100.0 100.0 100.0
Multiplicity 24.5 19.7 26.7
I/sigma 14.5 60.1 0.2
Rmerge 0.114 0.041 5.471
CC half 1.0 1.0 0.329
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 14.3 14.3 14.3
Cell 42.035 42.035 77.866 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.