X-Ray Diffraction data from Structures of the E.faecalis LiaR DNA binding domain complexed to the putative consensus sequence, source of 4WU4 structure

Data DOI: 10.15785/SBGRID/71 | ID: 71

Publication DOI: 10.1093/nar/gkv321

4WU4 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shamoo Laboratory, Rice University

Release Date: May 10, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/71

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/71 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/71 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/71 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/71 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 71 ; shasum -c files.sha'

Storage requirements: 12G

Biological Sample:

Structures of the E.faecalis LiaR DNA binding domain complexed to the putative consensus sequence

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA, Protein

Collection Facility:

APS BEAMLINE 21-ID-D

Data Creation Date:

April 19, 2014

Related Datasets:

None


Cite this Dataset

Davlieva, M; Shamoo, Y; Shamoo, Y. 2015. "X-Ray Diffraction data for: Structures of the E.faecalis LiaR DNA binding domain complexed to the putative consensus sequence. PDB Code 4WU4", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/71.

Download Citation

Dataset Description

Native datasets

Project Members

Name Additional Roles Affiliation While Working on the Project
Milya DavlievaData Collector, DepositorDepartment of BioSciences, Rice University, Houston, TX 77005, USA
Yousif ShamooData CollectorDepartment of BioSciences, Rice University, Houston, TX 77005, USA
Yousif ShamooPIRice University

Reprocessing Instructions

This data was indexed in space group P212121 and was processed with HKL2000 at 2.3 A

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97883

Sweep:

SWEEP1

Files:

/programs/datagrid/71/data4.###

Images:

1 - 360

Beam:

(150.0, 150.0) -> (150.0, 150.02)

Distance:

300.0 -> 300.48

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.05 5.56 2.05
Low resolution limit 62.13 62.16 2.09
Completeness 100.0 100.0 100.0
Multiplicity 13.9 12.5 10.1
I/sigma 9.8 23.4 0.9
Rmerge 0.177 0.064 2.838
CC half 0.996 0.999 0.309
Anomalous completeness 100.0 99.3 100.0
Anomalous multiplicity 7.5 7.5 7.5
Cell 38.252 77.124 104.882 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97883

Sweep:

SWEEP1

Files:

/programs/datagrid/71/data4.###

Images:

1 - 360

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

300.0 -> 300.92

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.13 5.75 2.13
Low resolution limit 21.64 21.65 2.17
Completeness 99.9 100.0 99.8
Multiplicity 14.3 12.0 14.6
I/sigma 14.6 39.0 1.2
Rmerge 0.103 0.045 2.169
CC half 0.999 0.999 0.549
Anomalous completeness 99.6 99.3 99.6
Anomalous multiplicity 7.7 7.7 7.7
Cell 38.31 77.21 104.93 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97883

Sweep:

SWEEP1

Files:

/programs/datagrid/71/data4.###

Images:

1 - 360

Beam:

(150.0, 150.0) -> (150.0, 149.91)

Distance:

300.0 -> 300.6

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.13 5.78 2.13
Low resolution limit 52.47 52.48 2.17
Completeness 99.9 100.0 99.7
Multiplicity 14.2 11.8 14.6
I/sigma 14.6 38.2 1.2
Rmerge 0.103 0.045 2.175
CC half 0.999 0.999 0.592
Anomalous completeness 99.6 99.1 99.5
Anomalous multiplicity 7.7 7.7 7.7
Cell 38.31 77.21 104.93 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97883

Sweep:

SWEEP1

Files:

/programs/datagrid/71/data4.###

Images:

1 - 360

Beam:

(150.0, 150.0) -> (150.0, 149.99)

Distance:

300.0 -> 301.84

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.22 6.02 2.22
Low resolution limit 52.7 52.71 2.26
Completeness 100.0 100.0 96.2
Multiplicity 14.1 12.5 13.5
I/sigma 10.9 23.5 1.5
Rmerge 0.124 0.053 2.06
CC half 0.998 0.999 0.84
Anomalous completeness 99.8 99.5 96.2
Anomalous multiplicity 7.6 7.6 7.6
Cell 38.524 77.57 105.396 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.