Data DOI: 10.15785/SBGRID/71 | ID: 71
Publication DOI: 10.1093/nar/gkv321
4WU4 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Shamoo Laboratory, Rice University
Release Date: 10 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/71
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/71 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/71 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/71 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/71 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 71 ; shasum -c files.sha'
Storage requirements: 12G
Biological Sample:
Structures of the E.faecalis LiaR DNA binding domain complexed to the putative consensus sequence
Dataset Type:
X-Ray Diffraction
Subject Composition:
DNA, Protein
Collection Facility:
APS BEAMLINE 21-ID-D
Data Creation Date:
19 Apr 2014
Related Datasets:
None
Davlieva, M; Shamoo, Y; Shamoo, Y. 2015. "X-Ray Diffraction data for: Structures of the E.faecalis LiaR DNA binding domain complexed to the putative consensus sequence. PDB Code 4WU4", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/71.
Native datasets
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Milya Davlieva | Data Collector, Depositor | Department of BioSciences, Rice University, Houston, TX 77005, USA |
| Yousif Shamoo | Data Collector | Department of BioSciences, Rice University, Houston, TX 77005, USA |
| Yousif Shamoo | PI | Rice University |
This data was indexed in space group P212121 and was processed with HKL2000 at 2.3 A
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/71/data4.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.91)
Distance:
300.0 -> 301.44
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.04 | 5.51 | 2.04 |
| Low resolution limit | 21.64 | 21.65 | 2.08 |
| Completeness | 100.0 | 100.0 | 99.9 |
| Multiplicity | 13.8 | 12.0 | 9.9 |
| I/sigma | 13.0 | 38.4 | 0.6 |
| Rmerge | 0.108 | 0.046 | 3.55 |
| CC half | 0.999 | 0.999 | 0.347 |
| Anomalous completeness | 100.0 | 99.9 | 99.8 |
| Anomalous multiplicity | 7.4 | 7.4 | 7.4 |
| Cell | 38.31 | 77.21 | 104.93 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/71/data4.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.91)
Distance:
300.0 -> 300.61
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.03 | 5.51 | 2.03 |
| Low resolution limit | 38.6 | 38.61 | 2.07 |
| Completeness | 100.0 | 100.0 | 99.7 |
| Multiplicity | 13.7 | 11.9 | 9.7 |
| I/sigma | 12.8 | 37.9 | 0.6 |
| Rmerge | 0.109 | 0.046 | 3.482 |
| CC half | 0.999 | 0.999 | 0.357 |
| Anomalous completeness | 100.0 | 99.7 | 99.7 |
| Anomalous multiplicity | 7.4 | 7.4 | 7.4 |
| Cell | 38.31 | 77.21 | 104.93 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97883
Sweep:
SWEEP1
Files:
/programs/datagrid/71/data4.###
Images:
1 - 360
Beam:
(150.0, 150.0) -> (150.0, 149.99)
Distance:
300.0 -> 300.09
Spacegroup:
P 21 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.78 | 4.84 | 1.78 |
| Low resolution limit | 62.27 | 62.3 | 1.81 |
| Completeness | 93.4 | 100.0 | 60.8 |
| Multiplicity | 11.0 | 13.2 | 5.2 |
| I/sigma | 10.4 | 29.0 | 21.8 |
| Rmerge | 0.148 | 0.069 | 0.149 |
| CC half | 0.939 | 0.997 | 0.213 |
| Anomalous completeness | 93.7 | 100.0 | 63.1 |
| Anomalous multiplicity | 5.8 | 5.8 | 5.8 |
| Cell | 38.388 | 77.315 | 105.037 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
