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X-Ray Diffraction data from RNA, source of 6E84 structure

Data DOI: 10.15785/SBGRID/704 | ID: 704

Publication DOI: 10.1016/j.chembiol.2019.04.012

6E84 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ferré-D'Amaré Laboratory, National Institutes of Health

Release Date: Aug. 20, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/704

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/704 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/704 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/704 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/704 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 704 ; shasum -c files.sha'

Storage requirements: 4.2G

Biological Sample:

RNA

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

ALS 5.0.1

Data Creation Date:

April 28, 2018

Related Datasets:

None


Cite this Dataset

Sjekloca, L; Ferre D'Amare, A; Ferré-D'Amaré, A. 2019. "X-Ray Diffraction data for: RNA. PDB Code 6E84", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/704.

Download Citation

Dataset Description

X-ray data diffraction

Project Members

Name Additional Roles Affiliation While Working on the Project
Ljiljana SjeklocaData Collector, DepositorNIH
Adrian Ferre D'AmareNIH
Adrian Ferré-D'AmaréPINational Institutes of Health

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/704/arf2p6_4_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 237.08)

Distance:

550.0 -> 557.86

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.79 7.5 2.79
Low resolution limit 24.29 24.29 2.84
Completeness 100.0 100.0 100.0
Multiplicity 19.8 18.2 19.6
I/sigma 17.5 83.4 0.3
Rmerge 0.122 0.023 13.999
CC half 1.0 1.0 -0.043
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 10.4 10.4 10.4
Cell 128.53 128.53 40.78 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/704/arf2p6_4_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 237.11)

Distance:

550.0 -> 551.3

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.77 7.5 2.77
Low resolution limit 37.1 37.11 2.82
Completeness 100.0 99.5 100.0
Multiplicity 19.8 18.0 19.7
I/sigma 17.3 83.8 0.3
Rmerge 0.113 0.021 13.117
CC half 1.0 1.0 0.073
Anomalous completeness 99.9 99.3 100.0
Anomalous multiplicity 10.4 10.4 10.4
Cell 128.53 128.53 40.78 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/704/arf2p6_4_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 237.12)

Distance:

550.0 -> 552.47

Spacegroup:

R 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.76 7.49 2.76
Low resolution limit 64.48 64.5 2.81
Completeness 100.0 100.0 100.0
Multiplicity 19.5 17.9 19.5
I/sigma 17.5 129.6 0.1
Rmerge 0.097 0.017 18.26
CC half 1.0 1.0 0.154
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 10.2 10.2 10.2
Cell 128.958 128.958 40.878 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.