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X-Ray Diffraction data from RNA, source of 6E82 structure

Data DOI: 10.15785/SBGRID/703 | ID: 703

Publication DOI: 10.1016/j.chembiol.2019.04.012

6E82 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ferré-D'Amaré Laboratory, National Institutes of Health

Release Date: Aug. 20, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/703

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/703 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/703 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/703 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/703 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 703 ; shasum -c files.sha'

Storage requirements: 4.2G

Biological Sample:

RNA

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

ALS 5.0.1

Data Creation Date:

Aug. 1, 2018

Related Datasets:

None


Cite this Dataset

Sjekloca, L; Ferre D'Amare, A; Ferré-D'Amaré, A. 2019. "X-Ray Diffraction data for: RNA. PDB Code 6E82", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/703.

Download Citation

Dataset Description

X ray data

Project Members

Name Additional Roles Affiliation While Working on the Project
Ljiljana SjeklocaData Collector, DepositorNIH
Adrian Ferre D'AmareNIH
Adrian Ferré-D'AmaréPINational Institutes of Health

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/703/arf28p14ds2_11_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 236.77)

Distance:

575.0 -> 571.88

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.92 7.85 2.92
Low resolution limit 24.67 24.67 2.97
Completeness 99.7 100.0 100.0
Multiplicity 19.9 18.1 20.8
I/sigma 11.6 64.1 0.4
Rmerge 0.219 0.031 10.849
CC half 1.0 1.0 0.23
Anomalous completeness 99.9 100.0 100.0
Anomalous multiplicity 10.4 10.4 10.4
Cell 130.55 130.55 40.62 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/703/arf28p14ds2_11_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 236.77)

Distance:

575.0 -> 575.95

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.91 7.88 2.91
Low resolution limit 37.69 37.69 2.96
Completeness 99.7 100.0 100.0
Multiplicity 19.9 18.0 21.0
I/sigma 11.7 65.6 0.3
Rmerge 0.173 0.025 13.734
CC half 1.0 1.0 0.177
Anomalous completeness 99.9 100.0 100.0
Anomalous multiplicity 10.4 10.4 10.4
Cell 130.56 130.56 40.62 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97741

Sweep:

SWEEP1

Files:

/programs/datagrid/703/arf28p14ds2_11_#####.cbf

Images:

1 - 720

Beam:

(223.94, 237.53) -> (223.94, 236.82)

Distance:

575.0 -> 576.88

Spacegroup:

R 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.87 7.79 2.87
Low resolution limit 65.43 65.45 2.92
Completeness 99.7 100.0 98.1
Multiplicity 19.6 17.9 19.6
I/sigma 11.9 99.6 0.2
Rmerge 0.153 0.02 17.109
CC half 1.0 1.0 0.352
Anomalous completeness 99.9 100.0 98.6
Anomalous multiplicity 10.3 10.3 10.3
Cell 130.857 130.857 40.69 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.