X-Ray Diffraction data from RNA, source of 6E81 structure

Data DOI: 10.15785/SBGRID/702 | ID: 702

Publication DOI: 10.1016/j.chembiol.2019.04.012

6E81 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ferré-D'Amaré Laboratory, National Institutes of Health

Release Date: 20 Aug 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/702

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/702 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/702 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/702 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/702 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 702 ; shasum -c files.sha'

Storage requirements: 17G

Biological Sample:

RNA

Dataset Type:

X-Ray Diffraction

Subject Composition:

RNA

Collection Facility:

ALS 5.0.2

Data Creation Date:

27 Jun 2017

Related Datasets:

None


Cite this Dataset

Sjekloca, L; Ferre- D'Amare, A; Ferré-D'Amaré, A. 2019. "X-Ray Diffraction data for: RNA. PDB Code 6E81", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/702.

Download Citation

Dataset Description

X-ray diffraction data

Project Members

Name Additional Roles Affiliation While Working on the Project
Ljiljana SjeklocaData Collector, DepositorNIH
Adrian Ferre- D'AmareNIH
Adrian Ferré-D'AmaréPINational Institutes of Health

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.00003

Sweep:

SWEEP1

Files:

/programs/datagrid/702/arf15p1_56_#####.cbf

Images:

1 - 2880

Beam:

(220.16, 214.31) -> (220.16, 214.37)

Distance:

450.0 -> 453.69

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.7 7.27 2.7
Low resolution limit 25.05 25.05 2.75
Completeness 98.8 99.0 93.8
Multiplicity 40.5 35.8 43.0
I/sigma 29.6 119.1 0.5
Rmerge 0.084 0.025 9.04
CC half 1.0 1.0 0.206
Anomalous completeness 99.4 100.0 96.0
Anomalous multiplicity 21.1 21.1 21.1
Cell 132.55 132.55 41.03 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.00003

Sweep:

SWEEP1

Files:

/programs/datagrid/702/arf15p1_56_#####.cbf

Images:

1 - 2880

Beam:

(220.16, 214.31) -> (220.16, 214.36)

Distance:

450.0 -> 453.3

Spacegroup:

H 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.71 7.34 2.71
Low resolution limit 38.64 38.64 2.76
Completeness 98.9 98.6 95.5
Multiplicity 40.4 35.4 43.5
I/sigma 30.1 120.7 0.6
Rmerge 0.074 0.022 8.924
CC half 1.0 1.0 0.168
Anomalous completeness 99.4 99.4 97.1
Anomalous multiplicity 21.1 21.1 21.1
Cell 132.55 132.55 41.03 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.00003

Sweep:

SWEEP1

Files:

/programs/datagrid/702/arf15p1_56_#####.cbf

Images:

1 - 2880

Beam:

(220.16, 214.31) -> (220.16, 214.37)

Distance:

450.0 -> 453.63

Spacegroup:

R 3 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.61 7.08 2.61
Low resolution limit 66.25 66.27 2.66
Completeness 99.0 99.6 100.0
Multiplicity 40.0 37.6 39.1
I/sigma 19.5 132.3 0.2
Rmerge 0.076 0.025 15.278
CC half 1.0 1.0 0.353
Anomalous completeness 99.5 100.0 100.0
Anomalous multiplicity 20.8 20.8 20.8
Cell 132.502 132.502 41.023 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.