X-Ray Diffraction data from Human Prothrombin, source of 4O03 structure

Data DOI: 10.15785/SBGRID/70 | ID: 70

Publication DOI: 10.1073/pnas.1403779111

4O03 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Di Cera Laboratory, Saint Louis University

Release Date: May 8, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/70

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/70 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/70 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/70 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/70 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 70 ; shasum -c files.sha'

Storage requirements: 3.8G

Biological Sample:

Human Prothrombin

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Data were collected with a home source (Rigaku 1.2 kW MMX007 generator with VHF optics) Rigaku Raxis IV++ detector

Data Creation Date:

June 27, 2013

Related Datasets:

None


Cite this Dataset

Chen, Z; Pozzi, N; Di Cera, E. 2015. "X-Ray Diffraction data for: Human Prothrombin. PDB Code 4O03", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/70.

Download Citation

Dataset Description

Crystal Structure of Human Prothrombin Deletion Mutant 146-167 (ProTΔ146-167) in the presence of Calcium Ions

Project Members

Name Additional Roles Affiliation While Working on the Project
Zhiwei ChenData Collector, DepositorSaint Louis University
Nicola PozziData CollectorSaint Louis University
Enrico Di CeraPISaint Louis University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.54187

Sweep:

SWEEP1

Files:

/programs/datagrid/70/protd145168camg_####.osc

Images:

1 - 220

Beam:

(149.75, 150.05) -> (149.75, 150.09)

Distance:

-280.0 -> -277.71

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.56 9.65 3.56
Low resolution limit 62.36 62.37 3.62
Completeness 98.5 100.0 69.8
Multiplicity 4.6 4.3 4.6
I/sigma 3.3 6.5 1.3
Rmerge 0.6 0.129 0.76
CC half 0.74 0.925 0.574
Anomalous completeness 98.4 98.9 70.1
Anomalous multiplicity 2.4 2.4 2.4
Cell 176.565 89.078 87.495 90.0 116.182 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.