X-Ray Diffraction data from Orsay virus capsid N-terminal deletion , source of 4NWW structure

Data DOI: 10.15785/SBGRID/7 | ID: 7

Publication DOI: 10.1073/pnas.1407122111

4NWW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Tao Laboratory, Rice University

Release Date: April 20, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/7

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/7 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/7 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/7 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/7 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 7 ; shasum -c files.sha'

Storage requirements: 2.7G

Biological Sample:

Orsay virus capsid N-terminal deletion

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS BEAMLINE 21-ID-F

Data Creation Date:

April 20, 2013

Related Datasets:

None


Cite this Dataset

Guo, YR; Tao, Y. 2015. "X-Ray Diffraction data for: Orsay virus capsid N-terminal deletion . PDB Code 4NWW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/7.

Download Citation

Dataset Description

Collection temperature 100K Wavelength 0.97872Å

Project Members

Name Additional Roles Affiliation While Working on the Project
Yusong R GuoData Collector, DepositorRice University
Yizhi (Jane) TaoPIRice University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/7/Yusong.####

Images:

301 - 450

Beam:

(112.46, 111.66) -> (112.46, 111.77)

Distance:

350.0 -> 351.14

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.77 10.23 3.77
Low resolution limit 108.15 108.19 3.84
Completeness 64.2 55.3 67.1
Multiplicity 2.0 2.2 1.9
I/sigma 3.7 17.4 1.1
Rmerge 0.247 0.072 0.632
CC half 0.89 0.957 0.417
Anomalous completeness 35.6 42.5 32.7
Anomalous multiplicity 1.3 1.3 1.3
Cell 374.85 404.809 412.931 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/7/Yusong.####

Images:

301 - 450

Beam:

(112.46, 111.66) -> (112.46, 111.67)

Distance:

350.0 -> 351.51

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.79 10.27 3.79
Low resolution limit 63.03 63.03 3.86
Completeness 44.6 35.6 48.4
Multiplicity 1.5 1.7 1.3
I/sigma 3.6 15.0 1.1
Rmerge 0.196 0.036 0.616
CC half 0.942 0.982 0.521
Anomalous completeness 17.3 24.3 13.7
Anomalous multiplicity 1.0 1.0 1.0
Cell 555.89 404.66 373.87 90.0 132.12 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/7/Yusong.####

Images:

301 - 450

Beam:

(112.46, 111.66) -> (112.46, 111.68)

Distance:

350.0 -> 349.89

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.86 10.46 3.86
Low resolution limit 65.15 65.16 3.93
Completeness 24.5 19.3 26.7
Multiplicity 1.3 1.6 1.2
I/sigma 3.8 18.6 1.0
Rmerge 0.0 0.0 0.0
CC half 0.947 0.982 0.51
Anomalous completeness 8.2 12.4 5.9
Anomalous multiplicity 1.0 1.0 1.0
Cell 342.5 342.81 342.87 114.35 106.13 107.84

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/7/Yusong.####

Images:

301 - 450

Beam:

(112.46, 111.66) -> (112.46, 111.73)

Distance:

350.0 -> 350.79

Spacegroup:

I 2 2 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.14 11.21 4.14
Low resolution limit 63.12 63.13 4.21
Completeness 63.2 53.8 65.1
Multiplicity 2.0 2.1 1.9
I/sigma 2.7 5.4 1.4
Rmerge 0.153 0.058 0.356
CC half 0.968 0.988 0.808
Anomalous completeness 35.9 40.9 32.4
Anomalous multiplicity 1.3 1.3 1.3
Cell 375.255 404.954 413.32 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.