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X-Ray Diffraction data from p120RasGAP N-terminal SH2 domain, source of 6PXB structure

Data DOI: 10.15785/SBGRID/698 | ID: 698

Publication DOI: 10.1371/journal.pone.0226113

6PXB Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Boggon Laboratory, Yale University School of Medicine

Release Date: Dec. 17, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/698

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/698 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/698 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/698 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/698 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 698 ; shasum -c files.sha'

Storage requirements: 4.2G

Biological Sample:

p120RasGAP N-terminal SH2 domain

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

APS NE-CAT-E 24-ID-E

Data Creation Date:

Feb. 14, 2019

Related Datasets:

None


Cite this Dataset

Jaber Chehayeb, R; Stiegler, AL; Boggon, TJ. 2019. "X-Ray Diffraction data for: p120RasGAP N-terminal SH2 domain. PDB Code 6PXB", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/698.

Download Citation

Dataset Description

Native data. 2 passes.

Project Members

Name Additional Roles Affiliation While Working on the Project
Titus J BoggonDepositorYale University
Rachel Jaber ChehayebData CollectorYale University
Amy L StieglerData CollectorYale University
Titus BoggonPIYale University School of Medicine

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/698/TJB1_3_rachel_2_####.cbf

Images:

181 - 540

Beam:

(216.87, 225.37) -> (216.87, 225.4)

Distance:

300.0 -> 301.3

Spacegroup:

P 31 1 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.52 4.12 1.52
Low resolution limit 40.68 40.69 1.55
Completeness 100.0 100.0 99.4
Multiplicity 18.6 19.1 9.6
I/sigma 14.0 56.8 0.3
Rmerge 0.074 0.044 5.433
CC half 1.0 1.0 0.432
Anomalous completeness 99.8 100.0 99.5
Anomalous multiplicity 9.6 9.6 9.6
Cell 64.11 64.11 119.55 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/698/TJB1_3_rachel_2_####.cbf

Images:

181 - 540

Beam:

(216.87, 225.37) -> (216.87, 225.41)

Distance:

300.0 -> 301.28

Spacegroup:

P 31 1 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.51 4.1 1.51
Low resolution limit 59.78 59.82 1.54
Completeness 100.0 100.0 99.8
Multiplicity 18.5 19.1 9.7
I/sigma 13.7 56.7 0.2
Rmerge 0.075 0.044 6.261
CC half 1.0 0.999 0.453
Anomalous completeness 99.8 100.0 99.7
Anomalous multiplicity 9.5 9.5 9.5
Cell 64.11 64.11 119.55 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9792

Sweep:

SWEEP2

Files:

/programs/datagrid/698/TJB1_3_rachel_2_####.cbf

Images:

181 - 540

Beam:

(216.87, 225.37) -> (216.87, 225.41)

Distance:

300.0 -> 301.94

Spacegroup:

P 31 1 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.48 4.01 1.48
Low resolution limit 119.7 120.09 1.5
Completeness 100.0 100.0 99.8
Multiplicity 19.1 19.4 14.7
I/sigma 9.0 61.9 0.1
Rmerge 0.076 0.045 10.473
CC half 0.999 1.0 0.416
Anomalous completeness 100.0 100.0 99.7
Anomalous multiplicity 9.8 9.8 9.8
Cell 64.165 64.165 119.699 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.