X-Ray Diffraction data from Complex of Notch1 (EGF11-13) bound to Delta-like 4 (N-EGF2) , source of 4XLW structure

Data DOI: 10.15785/SBGRID/69 | ID: 69

Publication DOI: 10.1126/science.1261093

4XLW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: 8 May 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/69

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/69 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/69 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/69 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/69 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 69 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Complex of Notch1 (EGF11-13) bound to Delta-like 4 (N-EGF2)

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALS beamline 8.2.2

Data Creation Date:

12 Apr 2014

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Luca, VC; Garcia, K. 2015. "X-Ray Diffraction data for: Complex of Notch1 (EGF11-13) bound to Delta-like 4 (N-EGF2) . PDB Code 4XLW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/69.

Download Citation

Dataset Description

Native dataset of Notch bound to Delta-like 4

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeDepositorStanford University
K C GarciaStanford University
Vincent C LucaData CollectorStanford University
K. Christopher GarciaPIStanford University

Reprocessing Instructions

processed with XDS to 3.4 Å resolution

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99996

Sweep:

SWEEP1

Files:

/programs/datagrid/69/2egf_1_###.img

Images:

1 - 180

Beam:

(155.1, 163.45) -> (155.1, 163.22)

Distance:

350.0 -> 352.2

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.27 8.87 3.27
Low resolution limit 84.05 84.07 3.33
Completeness 99.3 95.9 99.9
Multiplicity 3.7 3.5 3.7
I/sigma 5.1 19.4 0.6
Rmerge 0.182 0.03 2.017
CC half 0.997 0.999 0.318
Anomalous completeness 94.7 87.5 96.7
Anomalous multiplicity 1.9 1.9 1.9
Cell 84.54 95.57 122.89 90.0 96.19 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99996

Sweep:

SWEEP1

Files:

/programs/datagrid/69/2egf_1_###.img

Images:

1 - 180

Beam:

(155.1, 163.45) -> (155.1, 163.22)

Distance:

350.0 -> 350.75

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.27 8.87 3.27
Low resolution limit 95.57 95.61 3.33
Completeness 99.3 95.8 99.7
Multiplicity 3.7 3.5 3.7
I/sigma 5.1 19.3 0.6
Rmerge 0.182 0.031 1.969
CC half 0.997 0.999 0.33
Anomalous completeness 94.7 88.1 96.4
Anomalous multiplicity 1.9 1.9 1.9
Cell 84.54 95.57 122.9 90.0 96.19 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.99996

Sweep:

SWEEP1

Files:

/programs/datagrid/69/2egf_1_###.img

Images:

1 - 180

Beam:

(155.1, 163.45) -> (155.1, 163.23)

Distance:

350.0 -> 348.21

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.15 8.55 3.15
Low resolution limit 95.02 95.07 3.21
Completeness 100.0 100.0 98.4
Multiplicity 3.8 3.7 3.8
I/sigma 2.7 24.5 0.1
Rmerge 0.248 0.06 4.569
CC half 0.985 0.987 0.175
Anomalous completeness 99.3 100.0 98.0
Anomalous multiplicity 1.9 1.9 1.9
Cell 83.981 95.024 122.309 90.0 96.312 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.