Data DOI: 10.15785/SBGRID/687 | ID: 687
Publication DOI: 10.1073/pnas.1818631116
6ON6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Ozkan Laboratory, University of Chicago
Release Date: 6 Dec 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/687
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/687 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/687 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/687 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/687 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 687 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
C. elegans RIG-5 IG1 homodimer
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline BL9-2, SSRL, Menlo Park, CA
Data Creation Date:
22 May 2018
Related Datasets:
None
Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: C. elegans RIG-5 IG1 homodimer. PDB Code 6ON6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/687.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Shouqiang Cheng | Data Collector | University of Chicago |
| Justyna D Kurleto | Data Collector | University of Chicago |
| Engin Ozkan | Data Collector, Depositor, PI | University of Chicago |
Data processed in XDS with parameters from the header successfully. However, significant differences were observed for some important parameters post-processing: ORGX = 1227.4, ORGY = 1272.9, detector distance = 269.33 mm.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/687/A10_10_#####.cbf
Images:
1 - 1850
Beam:
(217.32, 211.82) -> (217.32, 211.82)
Distance:
270.0 -> 269.66
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.2 | 3.26 | 1.2 |
| Low resolution limit | 40.37 | 40.39 | 1.22 |
| Completeness | 92.7 | 100.0 | 29.5 |
| Multiplicity | 13.9 | 15.6 | 2.1 |
| I/sigma | 34.0 | 82.7 | 0.6 |
| Rmerge | 0.028 | 0.026 | 1.484 |
| CC half | 1.0 | 1.0 | 0.657 |
| Anomalous completeness | 90.1 | 100.0 | 18.0 |
| Anomalous multiplicity | 7.7 | 7.7 | 7.7 |
| Cell | 46.61 | 46.61 | 196.86 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/687/A10_10_#####.cbf
Images:
1 - 1850
Beam:
(217.32, 211.82) -> (217.32, 211.82)
Distance:
270.0 -> 269.51
Spacegroup:
P 63 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.2 | 3.26 | 1.2 |
| Low resolution limit | 40.37 | 40.39 | 1.22 |
| Completeness | 92.7 | 100.0 | 29.5 |
| Multiplicity | 13.9 | 15.6 | 2.1 |
| I/sigma | 34.0 | 82.6 | 0.6 |
| Rmerge | 0.028 | 0.026 | 1.49 |
| CC half | 1.0 | 1.0 | 0.652 |
| Anomalous completeness | 90.1 | 100.0 | 18.0 |
| Anomalous multiplicity | 7.7 | 7.7 | 7.7 |
| Cell | 46.61 | 46.61 | 196.86 | 90.0 | 90.0 | 120.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97946
Sweep:
SWEEP1
Files:
/programs/datagrid/687/A10_10_#####.cbf
Images:
1 - 1850
Beam:
(217.32, 211.82) -> (217.32, 211.77)
Distance:
270.0 -> 269.34
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.22 | 3.31 | 1.22 |
| Low resolution limit | 39.61 | 39.63 | 1.24 |
| Completeness | 59.7 | 86.2 | 6.0 |
| Multiplicity | 2.0 | 2.0 | 1.8 |
| I/sigma | 14.8 | 34.3 | -0.5 |
| Rmerge | 0.098 | 0.091 | -1.725 |
| CC half | 0.967 | 0.933 | 0.184 |
| Anomalous completeness | 44.3 | 77.1 | 3.1 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 35.861 | 46.636 | 46.635 | 120.003 | 109.896 | 91.4 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
