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Docking models for Docking Benchmark 4, 5 and CAPRI score_set

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Data DOI: 10.15785/SBGRID/684 | ID: 684

Publication DOI: 10.1093/bioinformatics/btz496

Bonvin Laboratory, Utrecht University

Release Date: July 9, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/684

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/684 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/684 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/684 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/684 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 684 ; shasum -c files.sha'

Storage requirements: 24G

Biological Sample:

Docking models for Docking Benchmark 4, 5 and CAPRI score_set

Dataset Type:

Structural Model

Subject Composition:

Protein

Collection Facility:

N.A.

Data Creation Date:

June 1, 2017

Related Datasets:

None


Cite this Dataset

Geng, C; Xue, LC.; Bonvin, A. 2019. "Docking models for Docking Benchmark 4, 5 and CAPRI score_set.", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/684.

Download Citation

Dataset Description

HADDOCK docking models for Protein-Protein Docking Benchmark 4; HADDOCK, pyDock, SwarmDock and ZDock docking models for new complexes of Docking Benchmark 5; Various docking models for CAPRI score_set. All of the non-HADDOCK models are refined with HADDOCK using energy minimisation.

Project Members

Name Additional Roles Affiliation While Working on the Project
Cunliang GengData Collector, DepositorUtrecht University
Li C. XueData CollectorUtrecht University
Alexandre BonvinData Collector, PIUtrecht University

Reprocessing Instructions

none


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.