X-Ray Diffraction data from Tn3 resolvase - DNA complex crystal form II, source of 5CY2 structure

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Data DOI: 10.15785/SBGRID/683 | ID: 683

5CY2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rice Laboratory, University of Chicago

Release Date: 18 Jun 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/683

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/683 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/683 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/683 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/683 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 683 ; shasum -c files.sha'

Storage requirements: 3.2G

Biological Sample:

Tn3 resolvase - DNA complex crystal form II

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA, Protein

Collection Facility:

SBC-CAT 19-ID @APS

Data Creation Date:

4 Apr 2009

Related Datasets:

None


Cite this Dataset

Montano, SP; Rice, PA. 2019. "X-Ray Diffraction data for: Tn3 resolvase - DNA complex crystal form II. PDB Code 5CY2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/683.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Phoebe A RiceDepositorPhoebe Rice lab
Sherwin P MontanoData CollectorPhoebe Rice lab
Phoebe RicePIUniversity of Chicago

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//683/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//683/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//683/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97948

Sweep:

SWEEP1

Files:

/programs/datagrid/683/sm76x1.####.img

Images:

1 - 180

Beam:

(154.78, 160.27) -> (154.78, 162.28)

Distance:

463.13 -> 460.8

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 4.18 11.34 4.18
Low resolution limit 104.35 104.38 4.25
Completeness 99.4 99.7 98.3
Multiplicity 2.0 2.0 2.0
I/sigma 8.8 71.8 0.4
Rmerge 0.105 0.101 0.369
CC half 0.936 0.906 0.446
Anomalous completeness 87.8 96.1 85.2
Anomalous multiplicity 1.0 1.0 1.0
Cell 104.743 104.713 105.913 96.822 96.746 92.742

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.