X-Ray Diffraction data from Tn3 resolvase - DNA complex crystal form I, source of 5CY1 structure

Data DOI: 10.15785/SBGRID/682 | ID: 682

5CY1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Rice Laboratory, University of Chicago

Release Date: June 18, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/682

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/682 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/682 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/682 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/682 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 682 ; shasum -c files.sha'

Storage requirements: 1.8G

Biological Sample:

Tn3 resolvase - DNA complex crystal form I

Dataset Type:

X-Ray Diffraction

Subject Composition:

DNA, Protein

Collection Facility:

SBC-CAT 19-ID @APS

Data Creation Date:

March 4, 2009

Related Datasets:

None


Cite this Dataset

Montano, SP; Rice, PA. 2019. "X-Ray Diffraction data for: Tn3 resolvase - DNA complex crystal form I. PDB Code 5CY1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/682.

Download Citation

Dataset Description

native data set

Project Members

Name Additional Roles Affiliation While Working on the Project
Phoebe A RiceDepositorRice lab
Sherwin P MontanoData CollectorRice lab
Phoebe RicePIUniversity of Chicago

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97948

Sweep:

SWEEP1

Files:

/programs/datagrid/682/sm77x5.####.img

Images:

1 - 100

Beam:

(154.78, 160.27) -> (154.78, 162.29)

Distance:

463.13 -> 461.34

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.29 8.92 3.29
Low resolution limit 51.0 51.01 3.35
Completeness 100.0 98.8 100.0
Multiplicity 7.7 6.1 8.0
I/sigma 14.0 44.2 0.7
Rmerge 0.066 0.024 3.299
CC half 0.999 0.999 0.202
Anomalous completeness 99.5 97.4 100.0
Anomalous multiplicity 4.3 4.3 4.3
Cell 77.18 77.18 271.83 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97948

Sweep:

SWEEP1

Files:

/programs/datagrid/682/sm77x5.####.img

Images:

1 - 100

Beam:

(154.78, 160.27) -> (154.78, 162.29)

Distance:

463.13 -> 462.5

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.32 9.0 3.32
Low resolution limit 54.36 54.37 3.38
Completeness 100.0 98.8 100.0
Multiplicity 7.6 6.1 8.0
I/sigma 14.4 44.4 0.8
Rmerge 0.065 0.023 2.709
CC half 0.999 0.999 0.33
Anomalous completeness 99.5 97.6 100.0
Anomalous multiplicity 4.3 4.3 4.3
Cell 77.18 77.18 271.81 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97948

Sweep:

SWEEP1

Files:

/programs/datagrid/682/sm77x5.####.img

Images:

1 - 100

Beam:

(154.78, 160.27) -> (154.78, 162.27)

Distance:

463.13 -> 459.93

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.2 8.68 3.2
Low resolution limit 76.86 76.88 3.25
Completeness 100.0 100.0 100.0
Multiplicity 7.8 6.4 8.1
I/sigma 11.8 74.0 0.2
Rmerge 0.068 0.032 3.28
CC half 0.992 0.987 0.237
Anomalous completeness 100.0 100.0 100.0
Anomalous multiplicity 4.3 4.3 4.3
Cell 76.862 76.862 270.717 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.