Data DOI: 10.15785/SBGRID/682 | ID: 682
5CY1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Rice Laboratory, University of Chicago
Release Date: 18 Jun 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/682
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/682 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/682 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/682 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/682 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 682 ; shasum -c files.sha'
Storage requirements: 1.8G
Biological Sample:
Tn3 resolvase - DNA complex crystal form I
Dataset Type:
X-Ray Diffraction
Subject Composition:
DNA, Protein
Collection Facility:
SBC-CAT 19-ID @APS
Data Creation Date:
4 Mar 2009
Related Datasets:
None
Montano, SP; Rice, PA. 2019. "X-Ray Diffraction data for: Tn3 resolvase - DNA complex crystal form I. PDB Code 5CY1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/682.
native data set
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Phoebe A Rice | Depositor | Rice lab |
| Sherwin P Montano | Data Collector | Rice lab |
| Phoebe Rice | PI | University of Chicago |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97948
Sweep:
SWEEP1
Files:
/programs/datagrid/682/sm77x5.####.img
Images:
1 - 100
Beam:
(154.78, 160.27) -> (154.78, 162.29)
Distance:
463.13 -> 461.34
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.29 | 8.92 | 3.29 |
| Low resolution limit | 51.0 | 51.01 | 3.35 |
| Completeness | 100.0 | 98.8 | 100.0 |
| Multiplicity | 7.7 | 6.1 | 8.0 |
| I/sigma | 14.0 | 44.2 | 0.7 |
| Rmerge | 0.066 | 0.024 | 3.299 |
| CC half | 0.999 | 0.999 | 0.202 |
| Anomalous completeness | 99.5 | 97.4 | 100.0 |
| Anomalous multiplicity | 4.3 | 4.3 | 4.3 |
| Cell | 77.18 | 77.18 | 271.83 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97948
Sweep:
SWEEP1
Files:
/programs/datagrid/682/sm77x5.####.img
Images:
1 - 100
Beam:
(154.78, 160.27) -> (154.78, 162.29)
Distance:
463.13 -> 462.5
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.32 | 9.0 | 3.32 |
| Low resolution limit | 54.36 | 54.37 | 3.38 |
| Completeness | 100.0 | 98.8 | 100.0 |
| Multiplicity | 7.6 | 6.1 | 8.0 |
| I/sigma | 14.4 | 44.4 | 0.8 |
| Rmerge | 0.065 | 0.023 | 2.709 |
| CC half | 0.999 | 0.999 | 0.33 |
| Anomalous completeness | 99.5 | 97.6 | 100.0 |
| Anomalous multiplicity | 4.3 | 4.3 | 4.3 |
| Cell | 77.18 | 77.18 | 271.81 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97948
Sweep:
SWEEP1
Files:
/programs/datagrid/682/sm77x5.####.img
Images:
1 - 100
Beam:
(154.78, 160.27) -> (154.78, 162.27)
Distance:
463.13 -> 459.93
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.2 | 8.68 | 3.2 |
| Low resolution limit | 76.86 | 76.88 | 3.25 |
| Completeness | 100.0 | 100.0 | 100.0 |
| Multiplicity | 7.8 | 6.4 | 8.1 |
| I/sigma | 11.8 | 74.0 | 0.2 |
| Rmerge | 0.068 | 0.032 | 3.28 |
| CC half | 0.992 | 0.987 | 0.237 |
| Anomalous completeness | 100.0 | 100.0 | 100.0 |
| Anomalous multiplicity | 4.3 | 4.3 | 4.3 |
| Cell | 76.862 | 76.862 | 270.717 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
