Data DOI: 10.15785/SBGRID/68 | ID: 68
Publication DOI: 10.1101/016733
4YUO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Fraser Laboratory, University of California, San Francisco
Release Date: 8 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/68
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/68 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/68 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/68 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/68 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 68 ; shasum -c files.sha'
Storage requirements: 2.1G
Biological Sample:
Cyclophilin A
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 11-1
Data Creation Date:
25 Jun 2013
Related Datasets:
None
Fraser, JS. 2015. "X-Ray Diffraction data for: Cyclophilin A. PDB Code 4YUO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/68.
Highest resolution room temperature diffraction data set for Cyclophilin A. Collected under paratone oil.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| James S Fraser | Data Collector, Depositor | University of California San Francisco |
| James Fraser | PI | University of California, San Francisco |
360 images processed in XDS to 1.2 A resolution. This dataset should process fine with all automated data processing pipelines.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.53)
Distance:
183.02 -> 182.37
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.1 | 2.98 | 1.1 |
| Low resolution limit | 26.63 | 26.64 | 1.12 |
| Completeness | 90.1 | 75.0 | 55.8 |
| Multiplicity | 5.6 | 5.7 | 4.2 |
| I/sigma | 7.8 | 13.9 | 1.2 |
| Rmerge | 0.102 | 0.097 | 0.918 |
| CC half | 0.99 | 0.977 | 0.493 |
| Anomalous completeness | 81.9 | 66.6 | 43.3 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 42.92 | 52.44 | 89.14 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.56)
Distance:
183.02 -> 182.36
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.11 | 3.01 | 1.11 |
| Low resolution limit | 44.57 | 44.61 | 1.13 |
| Completeness | 91.5 | 77.9 | 61.0 |
| Multiplicity | 5.7 | 5.8 | 4.4 |
| I/sigma | 7.8 | 14.1 | 1.2 |
| Rmerge | 0.103 | 0.098 | 1.02 |
| CC half | 0.99 | 0.978 | 0.467 |
| Anomalous completeness | 84.3 | 69.8 | 49.2 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 42.92 | 52.44 | 89.14 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.54)
Distance:
183.02 -> 181.75
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.23 | 3.33 | 1.23 |
| Low resolution limit | 45.02 | 45.05 | 1.25 |
| Completeness | 90.7 | 89.6 | 78.5 |
| Multiplicity | 3.5 | 3.7 | 3.3 |
| I/sigma | 3.0 | 5.4 | 0.9 |
| Rmerge | 0.334 | 0.299 | 0.642 |
| CC half | 0.736 | 0.71 | 0.406 |
| Anomalous completeness | 83.2 | 87.8 | 67.9 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 42.875 | 89.061 | 52.185 | 90.0 | 90.112 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
