Data DOI: 10.15785/SBGRID/68 | ID: 68
Publication DOI: 10.1101/016733
4YUO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Fraser Laboratory, University of California, San Francisco
Release Date: May 8, 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/68
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/68 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/68 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/68 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/68 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 68 ; shasum -c files.sha'
Storage requirements: 2.1G
Biological Sample:
Cyclophilin A
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 11-1
Data Creation Date:
June 25, 2013
Related Datasets:
None
Fraser, JS. 2015. "X-Ray Diffraction data for: Cyclophilin A. PDB Code 4YUO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/68.
Highest resolution room temperature diffraction data set for Cyclophilin A. Collected under paratone oil.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| James S Fraser | Data Collector, Depositor | University of California San Francisco |
| James Fraser | PI | University of California, San Francisco |
360 images processed in XDS to 1.2 A resolution. This dataset should process fine with all automated data processing pipelines.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.53)
Distance:
183.02 -> 182.37
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.11 | 3.01 | 1.11 |
| Low resolution limit | 26.63 | 26.64 | 1.13 |
| Completeness | 91.6 | 78.6 | 61.2 |
| Multiplicity | 5.8 | 5.8 | 4.5 |
| I/sigma | 7.8 | 14.1 | 1.1 |
| Rmerge | 0.103 | 0.098 | 1.048 |
| CC half | 0.99 | 0.977 | 0.45 |
| Anomalous completeness | 84.8 | 70.9 | 50.5 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 42.92 | 52.44 | 89.14 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.56)
Distance:
183.02 -> 182.36
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.12 | 3.04 | 1.12 |
| Low resolution limit | 44.57 | 44.61 | 1.14 |
| Completeness | 92.8 | 80.0 | 66.9 |
| Multiplicity | 5.9 | 5.8 | 4.8 |
| I/sigma | 7.7 | 14.3 | 1.1 |
| Rmerge | 0.104 | 0.098 | 1.125 |
| CC half | 0.99 | 0.979 | 0.471 |
| Anomalous completeness | 87.3 | 72.7 | 57.6 |
| Anomalous multiplicity | 3.2 | 3.2 | 3.2 |
| Cell | 42.92 | 52.44 | 89.14 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.54)
Distance:
183.02 -> 181.83
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.23 | 3.33 | 1.23 |
| Low resolution limit | 45.03 | 45.06 | 1.25 |
| Completeness | 90.8 | 89.6 | 78.6 |
| Multiplicity | 3.5 | 3.7 | 3.3 |
| I/sigma | 2.6 | 4.5 | 0.8 |
| Rmerge | 0.328 | 0.289 | 1.205 |
| CC half | 0.746 | 0.675 | 0.559 |
| Anomalous completeness | 83.2 | 87.8 | 67.9 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 42.881 | 89.071 | 52.188 | 90.0 | 90.108 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
