Data DOI: 10.15785/SBGRID/68 | ID: 68
Publication DOI: 10.1101/016733
4YUO Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Fraser Laboratory, University of California, San Francisco
Release Date: 8 May 2015
1. If this dataset is locally available, it should be accessable at /programs/datagrid/68
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/68 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/68 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/68 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/68 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 68 ; shasum -c files.sha'
Storage requirements: 2.1G
Biological Sample:
Cyclophilin A
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
SSRL beamline 11-1
Data Creation Date:
25 Jun 2013
Related Datasets:
None
Fraser, JS. 2015. "X-Ray Diffraction data for: Cyclophilin A. PDB Code 4YUO", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/68.
Highest resolution room temperature diffraction data set for Cyclophilin A. Collected under paratone oil.
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| James S Fraser | Data Collector, Depositor | University of California San Francisco |
| James Fraser | PI | University of California, San Francisco |
360 images processed in XDS to 1.2 A resolution. This dataset should process fine with all automated data processing pipelines.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.53)
Distance:
183.02 -> 182.37
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.06 | 2.88 | 1.06 |
| Low resolution limit | 26.63 | 26.64 | 1.08 |
| Completeness | 86.6 | 98.1 | 38.5 |
| Multiplicity | 5.7 | 6.4 | 3.8 |
| I/sigma | 7.2 | 14.4 | 0.6 |
| Rmerge | 0.11 | 0.109 | 1.778 |
| CC half | 0.988 | 0.979 | 0.309 |
| Anomalous completeness | 79.5 | 97.5 | 29.8 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 42.91 | 52.44 | 89.13 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.56)
Distance:
183.02 -> 182.37
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.06 | 2.88 | 1.06 |
| Low resolution limit | 44.56 | 44.6 | 1.08 |
| Completeness | 86.5 | 98.1 | 38.3 |
| Multiplicity | 5.6 | 6.4 | 3.7 |
| I/sigma | 7.3 | 14.4 | 0.7 |
| Rmerge | 0.11 | 0.109 | 1.567 |
| CC half | 0.988 | 0.979 | 0.331 |
| Anomalous completeness | 78.6 | 97.6 | 28.4 |
| Anomalous multiplicity | 3.1 | 3.1 | 3.1 |
| Cell | 42.91 | 52.44 | 89.13 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97945
Sweep:
SWEEP1
Files:
/programs/datagrid/68/set_1_1_#####.cbf
Images:
1 - 360
Beam:
(217.32, 211.82) -> (217.32, 211.52)
Distance:
183.02 -> 182.12
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 0.99 | 2.68 | 0.99 |
| Low resolution limit | 52.33 | 52.4 | 1.01 |
| Completeness | 73.4 | 96.8 | 3.4 |
| Multiplicity | 3.1 | 3.3 | 1.1 |
| I/sigma | 3.4 | 10.9 | 0.0 |
| Rmerge | 0.938 | 0.901 | 1.729 |
| CC half | 0.009 | -0.001 | 0.192 |
| Anomalous completeness | 63.2 | 92.0 | 0.3 |
| Anomalous multiplicity | 1.7 | 1.7 | 1.7 |
| Cell | 52.328 | 42.918 | 89.097 | 90.0 | 89.793 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
