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X-Ray Diffraction data from Hose liver alcohol dehydrogenase V203A substitution, NAD + pentafluorobenzyl alcohol, source of 4NG5 structure

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Data DOI: 10.15785/SBGRID/663 | ID: 663

4NG5 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Plapp Laboratory, University of Iowa

Release Date: 4 Jun 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/663

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/663 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/663 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/663 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/663 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 663 ; shasum -c files.sha'

Storage requirements: 69G

Biological Sample:

Hose liver alcohol dehydrogenase V203A substitution, NAD + pentafluorobenzyl alcohol

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

APS 23ID-B

Data Creation Date:

16 Jun 2007

Related Datasets:

None


Cite this Dataset

Ramaswamy, S; Plapp, BV. 2019. "X-Ray Diffraction data for: Hose liver alcohol dehydrogenase V203A substitution, NAD + pentafluorobenzyl alcohol. PDB Code 4NG5", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/663.

Download Citation

Dataset Description

low resolution data "v203apfb1_2" 720 frames, but images 620-627 blank; high resolution "v203apfb1_1", but images 481-499 are duplicated by images 500-518. Data to 1.1 A.

Project Members

Name Additional Roles Affiliation While Working on the Project
Bryce V PlappData Collector, DepositorThe University of Iowa
S. RamaswamyData CollectorThe University of Iowa
Bryce PlappPIUniversity of Iowa

Reprocessing Instructions

process high resolution images 1-480 and 500-1459 separately

Reprocessing Data

About Reprocessing

xia2 -2d

xia2 -3d

xia2 -3dii

xia2 -dials
/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3d /programs/datagrid//663/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=3dii /programs/datagrid//663/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.

/programs/x86_64-linux/dials/3.12.0/bin.capsules//xia2 pipeline=dials /programs/datagrid//663/ verbose=True multiprocessing.nproc=1 atom=X

Version:

version unreported

Reprocessing failed.


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.