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X-Ray Diffraction data from D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1, source of 6NRQ structure

Data DOI: 10.15785/SBGRID/646 | ID: 646

Publication DOI: 10.7554/eLife.41028

6NRQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 19, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/646

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/646 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/646 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/646 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/646 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 646 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 23-ID-B, GM/CA, APS, Chicago, IL

Data Creation Date:

Feb. 6, 2018

Related Datasets:

None


Cite this Dataset

Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1. PDB Code 6NRQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/646.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Justyna D KurletoData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Parameters used by XDS for data reduction: ROTATION_AXIS= 1 0 0 OSCILLATION_RANGE= 0.200000 X-RAY_WAVELENGTH= 1.033184 NX= 4150 NY= 4371 QX= 0.075000 QY= 0.075000 ORGX= 2046.00 ORGY= 2256.00 DETECTOR_DISTANCE= 280.000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.22)

Distance:

280.0 -> 279.9

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.71 4.64 1.71
Low resolution limit 48.54 48.56 1.74
Completeness 75.8 98.3 22.4
Multiplicity 1.7 1.8 1.6
I/sigma 7.0 16.7 1.0
Rmerge 0.054 0.028 0.385
CC half 0.996 0.995 0.291
Anomalous completeness 42.8 68.0 9.0
Anomalous multiplicity 1.1 1.1 1.1
Cell 51.005 53.559 55.464 62.641 73.03 87.209

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.2)

Distance:

280.0 -> 279.86

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.77 4.8 1.77
Low resolution limit 48.53 48.55 1.8
Completeness 86.4 98.9 39.4
Multiplicity 1.8 1.9 1.7
I/sigma 9.8 24.7 1.0
Rmerge 0.038 0.026 0.338
CC half 0.988 0.981 0.622
Anomalous completeness 57.3 77.2 19.2
Anomalous multiplicity 1.1 1.1 1.1
Cell 50.99 53.52 55.42 62.66 73.03 87.12

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.22)

Distance:

280.0 -> 285.91

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.78 4.83 1.78
Low resolution limit 47.32 47.34 1.81
Completeness 87.2 98.9 40.5
Multiplicity 1.8 1.9 1.7
I/sigma 9.9 25.3 1.1
Rmerge 0.038 0.025 0.336
CC half 0.991 0.982 0.621
Anomalous completeness 57.9 77.2 20.2
Anomalous multiplicity 1.1 1.1 1.1
Cell 51.0 53.53 55.43 62.66 73.03 87.12

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.21)

Distance:

280.0 -> 279.92

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.7 1.73
Low resolution limit 48.48 48.5 1.76
Completeness 82.9 99.3 31.0
Multiplicity 1.8 1.8 1.6
I/sigma 8.9 23.1 1.0
Rmerge 0.044 0.023 0.369
CC half 0.996 0.989 0.74
Anomalous completeness 52.0 74.7 13.0
Anomalous multiplicity 1.1 1.1 1.1
Cell 50.936 53.401 55.317 62.707 73.023 87.11

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.