X-Ray Diffraction data from D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1, source of 6NRQ structure

Data DOI: 10.15785/SBGRID/646 | ID: 646

Publication DOI: 10.7554/eLife.41028

6NRQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 19, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/646

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/646 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/646 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/646 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/646 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 646 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 23-ID-B, GM/CA, APS, Chicago, IL

Data Creation Date:

Feb. 6, 2018

Related Datasets:

None


Cite this Dataset

Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1. PDB Code 6NRQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/646.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Justyna D KurletoData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Parameters used by XDS for data reduction: ROTATION_AXIS= 1 0 0 OSCILLATION_RANGE= 0.200000 X-RAY_WAVELENGTH= 1.033184 NX= 4150 NY= 4371 QX= 0.075000 QY= 0.075000 ORGX= 2046.00 ORGY= 2256.00 DETECTOR_DISTANCE= 280.000

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.21)

Distance:

280.0 -> 279.93

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.65 4.48 1.65
Low resolution limit 47.32 47.34 1.68
Completeness 75.1 98.8 19.4
Multiplicity 1.8 1.9 1.6
I/sigma 10.0 28.4 0.4
Rmerge 0.037 0.02 0.669
CC half 0.984 0.975 0.35
Anomalous completeness 48.9 78.3 8.1
Anomalous multiplicity 1.1 1.1 1.1
Cell 51.0 53.53 55.43 62.66 73.03 87.12

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.22)

Distance:

280.0 -> 281.35

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.65 4.48 1.65
Low resolution limit 47.32 47.34 1.68
Completeness 75.1 98.9 19.3
Multiplicity 1.8 1.9 1.6
I/sigma 9.9 28.2 0.4
Rmerge 0.038 0.021 0.652
CC half 0.984 0.973 0.357
Anomalous completeness 48.9 78.3 8.0
Anomalous multiplicity 1.1 1.1 1.1
Cell 51.0 53.53 55.43 62.66 73.03 87.12

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.03318

Sweep:

SWEEP1

Files:

/programs/datagrid/646/A5_1_######.cbf

Images:

1 - 925

Beam:

(169.2, 153.45) -> (169.2, 153.22)

Distance:

280.0 -> 280.03

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.61 4.37 1.61
Low resolution limit 48.52 48.54 1.64
Completeness 71.1 99.3 13.1
Multiplicity 1.8 1.9 1.4
I/sigma 14.9 56.2 0.3
Rmerge 0.046 0.027 0.774
CC half 0.988 0.985 0.306
Anomalous completeness 45.4 78.0 3.9
Anomalous multiplicity 1.1 1.1 1.1
Cell 50.974 53.459 55.387 62.686 73.035 87.124

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.