Data DOI: 10.15785/SBGRID/646 | ID: 646
Publication DOI: 10.7554/eLife.41028
6NRQ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Ozkan Laboratory, University of Chicago
Release Date: 19 Feb 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/646
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/646 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/646 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/646 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/646 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 646 ; shasum -c files.sha'
Storage requirements: 16G
Biological Sample:
D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 23-ID-B, GM/CA, APS, Chicago, IL
Data Creation Date:
6 Feb 2018
Related Datasets:
None
Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr10 IG1 bound to DIP-alpha IG1. PDB Code 6NRQ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/646.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Shouqiang Cheng | Data Collector | University of Chicago |
| Justyna D Kurleto | Data Collector | University of Chicago |
| Engin Ozkan | Data Collector, Depositor, PI | University of Chicago |
Parameters used by XDS for data reduction: ROTATION_AXIS= 1 0 0 OSCILLATION_RANGE= 0.200000 X-RAY_WAVELENGTH= 1.033184 NX= 4150 NY= 4371 QX= 0.075000 QY= 0.075000 ORGX= 2046.00 ORGY= 2256.00 DETECTOR_DISTANCE= 280.000
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/646/A5_1_######.cbf
Images:
1 - 925
Beam:
(169.2, 153.45) -> (169.2, 153.21)
Distance:
280.0 -> 279.93
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.65 | 4.48 | 1.65 |
| Low resolution limit | 47.32 | 47.34 | 1.68 |
| Completeness | 75.1 | 98.8 | 19.4 |
| Multiplicity | 1.8 | 1.9 | 1.6 |
| I/sigma | 10.0 | 28.4 | 0.4 |
| Rmerge | 0.037 | 0.02 | 0.669 |
| CC half | 0.984 | 0.975 | 0.35 |
| Anomalous completeness | 48.9 | 78.3 | 8.1 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 51.0 | 53.53 | 55.43 | 62.66 | 73.03 | 87.12 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/646/A5_1_######.cbf
Images:
1 - 925
Beam:
(169.2, 153.45) -> (169.2, 153.22)
Distance:
280.0 -> 281.35
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.65 | 4.48 | 1.65 |
| Low resolution limit | 47.32 | 47.34 | 1.68 |
| Completeness | 75.1 | 98.9 | 19.3 |
| Multiplicity | 1.8 | 1.9 | 1.6 |
| I/sigma | 9.9 | 28.2 | 0.4 |
| Rmerge | 0.038 | 0.021 | 0.652 |
| CC half | 0.984 | 0.973 | 0.357 |
| Anomalous completeness | 48.9 | 78.3 | 8.0 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 51.0 | 53.53 | 55.43 | 62.66 | 73.03 | 87.12 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03318
Sweep:
SWEEP1
Files:
/programs/datagrid/646/A5_1_######.cbf
Images:
1 - 925
Beam:
(169.2, 153.45) -> (169.2, 153.22)
Distance:
280.0 -> 280.03
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.61 | 4.37 | 1.61 |
| Low resolution limit | 48.52 | 48.54 | 1.64 |
| Completeness | 71.1 | 99.3 | 13.1 |
| Multiplicity | 1.8 | 1.9 | 1.4 |
| I/sigma | 14.9 | 56.2 | 0.3 |
| Rmerge | 0.046 | 0.027 | 0.774 |
| CC half | 0.988 | 0.985 | 0.306 |
| Anomalous completeness | 45.4 | 78.0 | 3.9 |
| Anomalous multiplicity | 1.1 | 1.1 | 1.1 |
| Cell | 50.974 | 53.459 | 55.387 | 62.686 | 73.035 | 87.124 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
