X-Ray Diffraction data from D. melanogaster DIP-eta IG1 homodimer, source of 6NRX structure

Data DOI: 10.15785/SBGRID/645 | ID: 645

Publication DOI: 10.7554/eLife.41028

6NRX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 19, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/645

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/645 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/645 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/645 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/645 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 645 ; shasum -c files.sha'

Storage requirements: 16G

Biological Sample:

D. melanogaster DIP-eta IG1 homodimer

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 24-ID-E, NE-CAT, APS, Chicago, IL

Data Creation Date:

Nov. 25, 2017

Related Datasets:

None


Cite this Dataset

Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster DIP-eta IG1 homodimer. PDB Code 6NRX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/645.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Justyna D KurletoData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Data was processed in XDS with the following parameters: ORGX=2063.66 ORGY=2173.10 !Beam center (pixels) DETECTOR_DISTANCE=250.00 !(mm) OSCILLATION_RANGE=0.20 !(degrees) X-RAY_WAVELENGTH=0.97918 !(Angstroems) DIRECTION_OF_DETECTOR_Y-AXIS=0.0 1.0 0.0

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/645/H3_1_######.cbf

Images:

1 - 900

Beam:

(163.74, 154.88) -> (163.74, 154.65)

Distance:

250.0 -> 250.26

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.94 5.25 1.94
Low resolution limit 27.46 27.46 1.97
Completeness 95.7 98.7 89.8
Multiplicity 3.4 3.2 3.5
I/sigma 11.1 28.9 0.9
Rmerge 0.036 0.025 1.445
CC half 0.998 0.998 0.432
Anomalous completeness 85.9 87.7 81.5
Anomalous multiplicity 1.8 1.8 1.8
Cell 88.58 67.23 61.13 90.0 128.84 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/645/H3_1_######.cbf

Images:

1 - 900

Beam:

(163.74, 154.88) -> (163.74, 154.63)

Distance:

250.0 -> 250.5

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.93 5.24 1.93
Low resolution limit 48.15 48.17 1.96
Completeness 96.7 98.8 94.8
Multiplicity 3.4 3.2 3.5
I/sigma 11.1 29.2 1.2
Rmerge 0.036 0.025 1.031
CC half 0.998 0.998 0.606
Anomalous completeness 86.9 87.7 85.9
Anomalous multiplicity 1.8 1.8 1.8
Cell 88.59 67.23 61.13 90.0 128.84 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/645/H3_1_######.cbf

Images:

1 - 900

Beam:

(163.74, 154.88) -> (163.74, 154.64)

Distance:

250.0 -> 250.83

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.04 1.86
Low resolution limit 48.22 48.24 1.89
Completeness 99.7 99.8 97.1
Multiplicity 3.4 3.3 3.5
I/sigma 6.0 14.6 1.1
Rmerge 0.063 0.036 0.546
CC half 0.996 0.998 0.869
Anomalous completeness 92.8 96.1 88.4
Anomalous multiplicity 1.8 1.8 1.8
Cell 88.815 67.328 61.316 90.0 128.929 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.