Data DOI: 10.15785/SBGRID/645 | ID: 645
Publication DOI: 10.7554/eLife.41028
6NRX Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Ozkan Laboratory, University of Chicago
Release Date: 19 Feb 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/645
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/645 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/645 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/645 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/645 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 645 ; shasum -c files.sha'
Storage requirements: 16G
Biological Sample:
D. melanogaster DIP-eta IG1 homodimer
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 24-ID-E, NE-CAT, APS, Chicago, IL
Data Creation Date:
25 Nov 2017
Related Datasets:
None
Cheng, S; Kurleto, JD; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster DIP-eta IG1 homodimer. PDB Code 6NRX", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/645.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Shouqiang Cheng | Data Collector | University of Chicago |
| Justyna D Kurleto | Data Collector | University of Chicago |
| Engin Ozkan | Data Collector, Depositor, PI | University of Chicago |
Data was processed in XDS with the following parameters: ORGX=2063.66 ORGY=2173.10 !Beam center (pixels) DETECTOR_DISTANCE=250.00 !(mm) OSCILLATION_RANGE=0.20 !(degrees) X-RAY_WAVELENGTH=0.97918 !(Angstroems) DIRECTION_OF_DETECTOR_Y-AXIS=0.0 1.0 0.0
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/645/H3_1_######.cbf
Images:
1 - 900
Beam:
(163.74, 154.88) -> (163.74, 154.65)
Distance:
250.0 -> 250.08
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.74 | 4.72 | 1.74 |
| Low resolution limit | 27.46 | 27.46 | 1.77 |
| Completeness | 98.8 | 99.1 | 99.4 |
| Multiplicity | 3.4 | 3.3 | 3.5 |
| I/sigma | 8.7 | 29.4 | 0.4 |
| Rmerge | 0.039 | 0.026 | 2.082 |
| CC half | 0.998 | 0.998 | 0.379 |
| Anomalous completeness | 88.9 | 89.1 | 88.1 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 88.58 | 67.23 | 61.12 | 90.0 | 128.84 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/645/H3_1_######.cbf
Images:
1 - 900
Beam:
(163.74, 154.88) -> (163.74, 154.63)
Distance:
250.0 -> 250.5
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.74 | 4.72 | 1.74 |
| Low resolution limit | 47.61 | 47.63 | 1.77 |
| Completeness | 98.8 | 99.0 | 99.4 |
| Multiplicity | 3.4 | 3.3 | 3.5 |
| I/sigma | 8.7 | 29.5 | 0.5 |
| Rmerge | 0.039 | 0.025 | 2.1 |
| CC half | 0.998 | 0.998 | 0.353 |
| Anomalous completeness | 88.9 | 89.3 | 88.3 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 88.58 | 67.23 | 61.13 | 90.0 | 128.84 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97918
Sweep:
SWEEP1
Files:
/programs/datagrid/645/H3_1_######.cbf
Images:
1 - 900
Beam:
(163.74, 154.88) -> (163.74, 154.64)
Distance:
250.0 -> 250.84
Spacegroup:
C 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.64 | 4.45 | 1.64 |
| Low resolution limit | 48.21 | 48.23 | 1.67 |
| Completeness | 98.2 | 99.8 | 75.9 |
| Multiplicity | 3.4 | 3.4 | 2.7 |
| I/sigma | 7.9 | 46.7 | 0.1 |
| Rmerge | 0.067 | 0.041 | 2.186 |
| CC half | 0.995 | 0.994 | 0.482 |
| Anomalous completeness | 89.7 | 96.9 | 57.8 |
| Anomalous multiplicity | 1.8 | 1.8 | 1.8 |
| Cell | 88.819 | 67.315 | 61.325 | 90.0 | 128.947 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
