X-Ray Diffraction data from D. melanogaster Dpr1 IG1 bound to DIP-eta IG1, source of 6NRW structure

Data DOI: 10.15785/SBGRID/643 | ID: 643

Publication DOI: 10.7554/eLife.41028

6NRW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 15, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/643

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/643 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/643 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/643 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/643 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 643 ; shasum -c files.sha'

Storage requirements: 7.0G

Biological Sample:

D. melanogaster Dpr1 IG1 bound to DIP-eta IG1

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 23-ID-D, GM/CA, APS, Chicago, IL

Data Creation Date:

March 9, 2015

Related Datasets:

None


Cite this Dataset

Cheng, S; Park, YJ; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr1 IG1 bound to DIP-eta IG1. PDB Code 6NRW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/643.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Yeonhee J ParkData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Data collected on a Pilatus 6M detector using HKL2000 beam centers, x-beam=219.555, y-beam=208.639, distance=499 mm.

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP2

Files:

/programs/datagrid/643/A1_3_#####.cbf

Images:

1 - 600

Beam:

(219.82, 208.98) -> (219.82, 208.47)

Distance:

500.0 -> 499.9

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.4 6.5 2.4
Low resolution limit 33.55 33.56 2.44
Completeness 96.4 100.0 69.9
Multiplicity 16.4 14.2 10.0
I/sigma 13.9 35.1 1.3
Rmerge 0.125 0.052 1.591
CC half 0.999 0.999 0.523
Anomalous completeness 96.6 99.6 69.9
Anomalous multiplicity 8.9 8.9 8.9
Cell 74.23 74.23 235.45 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP2

Files:

/programs/datagrid/643/A1_3_#####.cbf

Images:

1 - 600

Beam:

(219.82, 208.98) -> (219.82, 208.46)

Distance:

500.0 -> 499.05

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.41 6.53 2.41
Low resolution limit 39.76 39.77 2.45
Completeness 96.8 100.0 71.6
Multiplicity 16.5 14.1 11.9
I/sigma 14.1 35.2 1.4
Rmerge 0.124 0.051 1.638
CC half 0.999 0.999 0.607
Anomalous completeness 97.0 99.7 71.8
Anomalous multiplicity 9.0 9.0 9.0
Cell 74.23 74.23 235.45 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP2

Files:

/programs/datagrid/643/A1_3_#####.cbf

Images:

1 - 600

Beam:

(219.82, 208.98) -> (219.82, 208.47)

Distance:

500.0 -> 499.14

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.27 6.15 2.27
Low resolution limit 39.77 39.78 2.31
Completeness 90.3 100.0 48.9
Multiplicity 16.2 14.6 12.1
I/sigma 10.9 21.4 1.5
Rmerge 0.157 0.064 2.251
CC half 0.997 0.999 0.63
Anomalous completeness 90.0 100.0 47.8
Anomalous multiplicity 8.8 8.8 8.8
Cell 74.214 74.214 235.555 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.