Data DOI: 10.15785/SBGRID/642 | ID: 642
Publication DOI: 10.7554/eLife.41028
6NRR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Ozkan Laboratory, University of Chicago
Release Date: 15 Feb 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/642
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/642 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/642 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/642 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/642 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 642 ; shasum -c files.sha'
Storage requirements: 5.7G
Biological Sample:
D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Beamline 23-ID-B, GM/CA, APS, Chicago, IL
Data Creation Date:
6 Oct 2014
Related Datasets:
None
Cheng, S; Park, YJ; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2. PDB Code 6NRR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/642.
Native dataset
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Shouqiang Cheng | Data Collector | University of Chicago |
| Yeonhee J Park | Data Collector | University of Chicago |
| Engin Ozkan | Data Collector, Depositor, PI | University of Chicago |
Detector and geometry parameters (after refining) in XDS: DETECTOR=MARCCD300 DETECTOR COORDINATES (PIXELS) OF DIRECT BEAM 2051.18 2051.67 DETECTOR ORIGIN (PIXELS) AT 2056.67 2038.68 CRYSTAL TO DETECTOR DISTANCE (mm) 399.74 Other useful geometry parameters used in the XDS.INP file: NX=4096 NY=4096 QX=0.073242 QY=0.073242 !MARCCD 300mm version at APS 23ID DETECTOR_DISTANCE= 400.001 !(mm) ROTATION_AXIS= 1.0 0.0 0.0 OSCILLATION_RANGE=1.0 !degrees (>0) X-RAY_WAVELENGTH=0.96638 !Angstroem INCIDENT_BEAM_DIRECTION=0.0 0.0 1.0 FRACTION_OF_POLARIZATION=0.99
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96638
Sweep:
SWEEP1
Files:
/programs/datagrid/642/2B2_1.####
Images:
1 - 180
Beam:
(150.51, 150.0) -> (150.51, 150.12)
Distance:
400.0 -> 399.37
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.43 | 6.59 | 2.43 |
| Low resolution limit | 52.15 | 52.16 | 2.47 |
| Completeness | 100.0 | 100.0 | 99.6 |
| Multiplicity | 12.7 | 12.4 | 6.5 |
| I/sigma | 14.3 | 45.7 | 0.6 |
| Rmerge | 0.147 | 0.038 | 2.883 |
| CC half | 0.998 | 0.999 | 0.2 |
| Anomalous completeness | 99.9 | 100.0 | 99.1 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 85.35 | 85.35 | 103.58 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96638
Sweep:
SWEEP1
Files:
/programs/datagrid/642/2B2_1.####
Images:
1 - 180
Beam:
(150.51, 150.0) -> (150.51, 150.11)
Distance:
400.0 -> 399.41
Spacegroup:
P 41 21 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.43 | 6.59 | 2.43 |
| Low resolution limit | 60.35 | 60.37 | 2.47 |
| Completeness | 100.0 | 100.0 | 99.6 |
| Multiplicity | 12.7 | 12.4 | 6.5 |
| I/sigma | 14.3 | 45.6 | 0.6 |
| Rmerge | 0.147 | 0.038 | 2.896 |
| CC half | 0.998 | 0.999 | 0.208 |
| Anomalous completeness | 99.9 | 100.0 | 99.1 |
| Anomalous multiplicity | 6.9 | 6.9 | 6.9 |
| Cell | 85.35 | 85.35 | 103.57 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.96638
Sweep:
SWEEP1
Files:
/programs/datagrid/642/2B2_1.####
Images:
1 - 180
Beam:
(150.51, 150.0) -> (150.51, 150.2)
Distance:
400.0 -> 398.62
Spacegroup:
P 4 2 2
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 2.38 | 6.47 | 2.38 |
| Low resolution limit | 103.43 | 103.52 | 2.42 |
| Completeness | 99.8 | 100.0 | 96.1 |
| Multiplicity | 12.3 | 12.6 | 6.0 |
| I/sigma | 27.3 | 39.3 | 13.5 |
| Rmerge | 0.184 | 0.095 | 0.155 |
| CC half | 0.926 | 0.995 | 0.196 |
| Anomalous completeness | 99.8 | 100.0 | 96.5 |
| Anomalous multiplicity | 6.7 | 6.7 | 6.7 |
| Cell | 85.245 | 85.245 | 103.427 | 90.0 | 90.0 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
