X-Ray Diffraction data from D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2, source of 6NRR structure

Data DOI: 10.15785/SBGRID/642 | ID: 642

Publication DOI: 10.7554/eLife.41028

6NRR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 15, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/642

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/642 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/642 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/642 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/642 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 642 ; shasum -c files.sha'

Storage requirements: 5.7G

Biological Sample:

D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 23-ID-B, GM/CA, APS, Chicago, IL

Data Creation Date:

Oct. 6, 2014

Related Datasets:

None


Cite this Dataset

Cheng, S; Park, YJ; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2. PDB Code 6NRR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/642.

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Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Yeonhee J ParkData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Detector and geometry parameters (after refining) in XDS: DETECTOR=MARCCD300 DETECTOR COORDINATES (PIXELS) OF DIRECT BEAM 2051.18 2051.67 DETECTOR ORIGIN (PIXELS) AT 2056.67 2038.68 CRYSTAL TO DETECTOR DISTANCE (mm) 399.74 Other useful geometry parameters used in the XDS.INP file: NX=4096 NY=4096 QX=0.073242 QY=0.073242 !MARCCD 300mm version at APS 23ID DETECTOR_DISTANCE= 400.001 !(mm) ROTATION_AXIS= 1.0 0.0 0.0 OSCILLATION_RANGE=1.0 !degrees (>0) X-RAY_WAVELENGTH=0.96638 !Angstroem INCIDENT_BEAM_DIRECTION=0.0 0.0 1.0 FRACTION_OF_POLARIZATION=0.99


License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.