X-Ray Diffraction data from D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2, source of 6NRR structure

Data DOI: 10.15785/SBGRID/642 | ID: 642

Publication DOI: 10.7554/eLife.41028

6NRR Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Ozkan Laboratory, University of Chicago

Release Date: Feb. 15, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/642

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/642 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/642 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/642 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/642 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 642 ; shasum -c files.sha'

Storage requirements: 5.7G

Biological Sample:

D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline 23-ID-B, GM/CA, APS, Chicago, IL

Data Creation Date:

Oct. 6, 2014

Related Datasets:

None


Cite this Dataset

Cheng, S; Park, YJ; Ozkan, E. 2019. "X-Ray Diffraction data for: D. melanogaster Dpr11 IG1 bound to DIP-gamma IG1+IG2. PDB Code 6NRR", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/642.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Shouqiang ChengData CollectorUniversity of Chicago
Yeonhee J ParkData CollectorUniversity of Chicago
Engin OzkanData Collector, Depositor, PIUniversity of Chicago

Reprocessing Instructions

Detector and geometry parameters (after refining) in XDS: DETECTOR=MARCCD300 DETECTOR COORDINATES (PIXELS) OF DIRECT BEAM 2051.18 2051.67 DETECTOR ORIGIN (PIXELS) AT 2056.67 2038.68 CRYSTAL TO DETECTOR DISTANCE (mm) 399.74 Other useful geometry parameters used in the XDS.INP file: NX=4096 NY=4096 QX=0.073242 QY=0.073242 !MARCCD 300mm version at APS 23ID DETECTOR_DISTANCE= 400.001 !(mm) ROTATION_AXIS= 1.0 0.0 0.0 OSCILLATION_RANGE=1.0 !degrees (>0) X-RAY_WAVELENGTH=0.96638 !Angstroem INCIDENT_BEAM_DIRECTION=0.0 0.0 1.0 FRACTION_OF_POLARIZATION=0.99

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.96638

Sweep:

SWEEP1

Files:

/programs/datagrid/642/2B2_1.####

Images:

1 - 180

Beam:

(150.51, 150.0) -> (150.51, 150.21)

Distance:

400.0 -> 399.98

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.43 6.6 2.43
Low resolution limit 85.45 85.5 2.47
Completeness 100.0 100.0 98.8
Multiplicity 12.4 12.4 5.9
I/sigma 11.1 26.7 1.4
Rmerge 0.187 0.051 1.143
CC half 0.995 0.999 0.256
Anomalous completeness 99.9 100.0 98.5
Anomalous multiplicity 6.7 6.7 6.7
Cell 85.448 85.448 103.651 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.96638

Sweep:

SWEEP1

Files:

/programs/datagrid/642/2B2_1.####

Images:

1 - 180

Beam:

(150.51, 150.0) -> (150.51, 150.11)

Distance:

400.0 -> 399.41

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.55 6.92 2.55
Low resolution limit 52.15 52.16 2.59
Completeness 100.0 100.0 100.0
Multiplicity 13.6 12.4 9.0
I/sigma 16.3 46.7 1.0
Rmerge 0.138 0.037 2.105
CC half 0.998 0.999 0.677
Anomalous completeness 99.8 100.0 99.8
Anomalous multiplicity 7.5 7.5 7.5
Cell 85.36 85.36 103.58 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.96638

Sweep:

SWEEP1

Files:

/programs/datagrid/642/2B2_1.####

Images:

1 - 180

Beam:

(150.51, 150.0) -> (150.51, 150.11)

Distance:

400.0 -> 399.41

Spacegroup:

P 41 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.56 6.95 2.56
Low resolution limit 60.36 60.38 2.6
Completeness 100.0 100.0 100.0
Multiplicity 13.7 12.4 9.2
I/sigma 16.5 46.8 1.1
Rmerge 0.137 0.037 2.002
CC half 0.998 0.999 0.718
Anomalous completeness 99.8 100.0 99.8
Anomalous multiplicity 7.5 7.5 7.5
Cell 85.36 85.36 103.58 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.96638

Sweep:

SWEEP1

Files:

/programs/datagrid/642/2B2_1.####

Images:

1 - 180

Beam:

(150.51, 150.0) -> (150.51, 150.2)

Distance:

400.0 -> 398.77

Spacegroup:

P 4 21 2

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.83 7.66 2.83
Low resolution limit 35.7 35.7 2.88
Completeness 66.0 35.6 30.8
Multiplicity 2.1 1.4 1.1
I/sigma 4.5 7.7 0.7
Rmerge 0.118 0.043 0.546
CC half 0.982 0.989 0.696
Anomalous completeness 39.5 12.1 3.5
Anomalous multiplicity 1.4 1.4 1.4
Cell 85.077 85.077 103.244 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.