X-Ray Diffraction data from protein, source of 6NMW structure

Data DOI: 10.15785/SBGRID/640 | ID: 640

6NMW Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: Jan. 18, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/640

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/640 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/640 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/640 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/640 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 640 ; shasum -c files.sha'

Storage requirements: 7.0G

Biological Sample:

protein

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

SSRL BL9-2

Data Creation Date:

July 7, 2018

Related Datasets:

None


Cite this Dataset

Berndt, S; Gurevich, VV; Iverson, TM; Iverson, T. 2019. "X-Ray Diffraction data for: protein. PDB Code 6NMW", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/640.

Download Citation

Dataset Description

Complete data set from a single crystal for Lyn kinase SH3 domain

Project Members

Name Additional Roles Affiliation While Working on the Project
Sandra BerndtData Collector, DepositorVanderbilt University
Vsevolod V GurevichVanderbilt University
T M IversonVanderbilt University
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/640/B1_13_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.71)

Distance:

214.6 -> 214.58

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.07 2.9 1.07
Low resolution limit 16.88 16.88 1.09
Completeness 69.3 93.6 6.8
Multiplicity 10.3 10.1 5.7
I/sigma 28.9 70.8 0.8
Rmerge 0.028 0.023 1.717
CC half 1.0 1.0 0.273
Anomalous completeness 67.4 92.2 4.8
Anomalous multiplicity 5.3 5.3 5.3
Cell 46.74 46.74 55.7 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/640/B1_13_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.71)

Distance:

214.6 -> 214.62

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.07 2.91 1.07
Low resolution limit 23.37 23.38 1.09
Completeness 69.2 93.6 6.8
Multiplicity 10.3 10.1 5.7
I/sigma 28.9 70.8 0.8
Rmerge 0.028 0.023 1.723
CC half 1.0 1.0 0.311
Anomalous completeness 67.4 92.3 4.8
Anomalous multiplicity 5.3 5.3 5.3
Cell 46.74 46.74 55.7 90.0 90.0 120.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/640/B1_13_#####.cbf

Images:

1 - 1200

Beam:

(217.32, 211.82) -> (217.32, 211.71)

Distance:

214.6 -> 214.75

Spacegroup:

P 6

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.07 2.91 1.07
Low resolution limit 40.48 40.51 1.09
Completeness 68.1 92.4 6.1
Multiplicity 10.2 10.6 4.8
I/sigma 29.0 76.7 1.0
Rmerge 0.03 0.024 1.406
CC half 0.999 0.999 0.453
Anomalous completeness 66.0 90.5 4.3
Anomalous multiplicity 5.3 5.3 5.3
Cell 46.747 46.747 55.702 90.0 90.0 120.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.