X-Ray Diffraction data from KAP1/TRIM28, source of 6QAJ structure

Data DOI: 10.15785/SBGRID/637 | ID: 637

Publication DOI: 10.1073/PNAS.1901318116

6QAJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Modis Laboratory, University of Cambridge

Release Date: 28 Jan 2020

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/637

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/637 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/637 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/637 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/637 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 637 ; shasum -c files.sha'

Storage requirements: 5.9G

Biological Sample:

KAP1/TRIM28

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

DLS I03

Data Creation Date:

2 Aug 2018

Related Datasets:

None


Cite this Dataset

Stoll, GA; Modis, Y. 2020. "X-Ray Diffraction data for: KAP1/TRIM28. PDB Code 6QAJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/637.

Download Citation

Dataset Description

X-ray diffraction data for the RBCC motif of the tripartite motif (TRIM) of KAP1/TRIM28 collected at the zinc absorption peak wavelength

Project Members

Name Additional Roles Affiliation While Working on the Project
Guido A StollData CollectorUniversity of Cambridge
Yorgo ModisDepositor, PIUniversity of Cambridge

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.28189

Sweep:

SWEEP1

Files:

/programs/datagrid/637/95_8_8_8_1_####.cbf

Images:

1 - 1000

Beam:

(206.12, 209.55) -> (206.12, 209.45)

Distance:

343.07 -> 342.42

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.35 9.08 3.35
Low resolution limit 51.4 51.4 3.41
Completeness 99.4 98.5 99.0
Multiplicity 4.8 4.6 4.7
I/sigma 6.9 29.1 0.5
Rmerge 0.09 0.033 4.559
CC half 0.998 0.998 0.243
Anomalous completeness 95.6 91.6 95.8
Anomalous multiplicity 2.4 2.4 2.4
Cell 59.77 374.51 89.764 90.0 109.339 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.28189

Sweep:

SWEEP1

Files:

/programs/datagrid/637/95_8_8_8_1_####.cbf

Images:

1 - 1000

Beam:

(206.12, 209.55) -> (206.12, 209.47)

Distance:

343.07 -> 343.4

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.35 9.09 3.35
Low resolution limit 93.63 93.67 3.41
Completeness 99.4 98.6 99.0
Multiplicity 4.8 4.6 4.7
I/sigma 6.9 29.1 0.5
Rmerge 0.089 0.033 4.285
CC half 0.998 0.997 0.248
Anomalous completeness 95.7 91.4 95.8
Anomalous multiplicity 2.4 2.4 2.4
Cell 59.77 374.52 89.76 90.0 109.34 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.28189

Sweep:

SWEEP1

Files:

/programs/datagrid/637/95_8_8_8_1_####.cbf

Images:

1 - 1000

Beam:

(206.12, 209.55) -> (206.12, 209.47)

Distance:

343.07 -> 343.27

Spacegroup:

C 2 2 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.87 7.79 2.87
Low resolution limit 93.61 93.66 2.92
Completeness 99.8 100.0 93.9
Multiplicity 9.2 8.5 9.4
I/sigma 3.8 41.3 0.0
Rmerge 0.142 0.043 9.516
CC half 0.997 0.996 0.379
Anomalous completeness 99.7 100.0 93.6
Anomalous multiplicity 4.8 4.8 4.8
Cell 59.846 169.101 374.426 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.