X-Ray Diffraction data from Bdf1 bromodomain BD1 from Candida albicans, source of 5N15 structure

Data DOI: 10.15785/SBGRID/627 | ID: 627

Publication DOI: 10.1038/ncomms15482

5N15 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Petosa Laboratory, Institut de Biologie Structurale, Grenoble

Release Date: 30 Oct 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/627

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/627 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/627 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/627 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/627 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 627 ; shasum -c files.sha'

Storage requirements: 2.2G

Biological Sample:

Bdf1 bromodomain BD1 from Candida albicans

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF beamline ID23-2

Data Creation Date:

10 Dec 2013

Related Datasets:

None


Cite this Dataset

Petosa, C. 2018. "X-Ray Diffraction data for: Bdf1 bromodomain BD1 from Candida albicans. PDB Code 5N15", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/627.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Carlo PetosaData Collector, DepositorInstitut de Biologie Structurale, Grenoble, France
Carlo PetosaPIInstitut de Biologie Structurale, Grenoble

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.8729

Sweep:

SWEEP1

Files:

/programs/datagrid/627/CaBD1apo__b5p9_####.mccd

Images:

1 - 120

Beam:

(112.3, 113.65) -> (112.3, 112.41)

Distance:

250.21 -> 250.55

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.25 6.11 2.25
Low resolution limit 63.72 63.75 2.29
Completeness 100.0 99.5 100.0
Multiplicity 4.7 4.3 4.7
I/sigma 9.8 24.1 1.9
Rmerge 0.11 0.022 0.761
CC half 0.995 0.999 0.592
Anomalous completeness 98.6 99.4 98.1
Anomalous multiplicity 2.5 2.5 2.5
Cell 50.69 67.697 188.746 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.8729

Sweep:

SWEEP1

Files:

/programs/datagrid/627/CaBD1apo__b5p9_####.mccd

Images:

1 - 120

Beam:

(112.3, 113.65) -> (112.3, 112.32)

Distance:

250.21 -> 250.31

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.26 6.13 2.26
Low resolution limit 50.64 50.65 2.3
Completeness 99.9 99.0 99.9
Multiplicity 4.9 4.4 5.0
I/sigma 13.2 38.2 1.6
Rmerge 0.074 0.02 1.082
CC half 0.998 0.999 0.665
Anomalous completeness 97.8 97.9 99.1
Anomalous multiplicity 2.6 2.6 2.6
Cell 50.64 67.59 188.6 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.8729

Sweep:

SWEEP1

Files:

/programs/datagrid/627/CaBD1apo__b5p9_####.mccd

Images:

1 - 120

Beam:

(112.3, 113.65) -> (112.3, 112.32)

Distance:

250.21 -> 250.07

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.25 6.1 2.25
Low resolution limit 50.64 50.65 2.29
Completeness 99.9 99.0 99.9
Multiplicity 4.9 4.4 5.0
I/sigma 13.0 38.0 1.5
Rmerge 0.075 0.021 1.121
CC half 0.998 0.999 0.643
Anomalous completeness 97.8 97.9 98.5
Anomalous multiplicity 2.6 2.6 2.6
Cell 50.64 67.59 188.6 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.8729

Sweep:

SWEEP1

Files:

/programs/datagrid/627/CaBD1apo__b5p9_####.mccd

Images:

1 - 120

Beam:

(112.3, 113.65) -> (112.3, 112.38)

Distance:

250.21 -> 249.64

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.18 5.91 2.18
Low resolution limit 67.49 67.53 2.22
Completeness 100.0 99.6 97.9
Multiplicity 4.9 4.5 4.9
I/sigma 10.3 26.3 2.0
Rmerge 0.092 0.021 0.57
CC half 0.997 0.999 0.565
Anomalous completeness 99.3 99.9 96.8
Anomalous multiplicity 2.6 2.6 2.6
Cell 50.522 67.493 188.124 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.