X-Ray Diffraction data from Glycoprotein E2 from bovine viral diarrhea virus, source of 4ILD structure

Data DOI: 10.15785/SBGRID/62 | ID: 62

Publication DOI: 10.1073/pnas.1300524110

4ILD Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Modis Laboratory, University of Cambridge

Release Date: May 7, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/62

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/62 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/62 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/62 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/62 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 62 ; shasum -c files.sha'

Storage requirements: 7.0G

Biological Sample:

Glycoprotein E2 from bovine viral diarrhea virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline X25, NSLS, BNL

Data Creation Date:

Dec. 4, 2012

Related Datasets:

None


Cite this Dataset

Li, Y; Wang, J; Modis, Y. 2015. "X-Ray Diffraction data for: Glycoprotein E2 from bovine viral diarrhea virus. PDB Code 4ILD", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/62.

Download Citation

Dataset Description

Uranyl acetate derivative 2, E2 domains I-II

Project Members

Name Additional Roles Affiliation While Working on the Project
Yue LiData CollectorYale University
Jimin WangData CollectorYale University
Yorgo ModisData Collector, Depositor, PIUniversity of Cambridge

Reprocessing Instructions

Use HKL2000 or XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2142

Sweep:

SWEEP1

Files:

/programs/datagrid/62/uoac_5mM_2_1_#####.cbf

Images:

1 - 1200

Beam:

(226.87, 220.33) -> (226.87, 218.32)

Distance:

500.0 -> 504.82

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 3.57 9.68 3.57
Low resolution limit 67.09 67.1 3.63
Completeness 96.1 74.3 97.2
Multiplicity 6.4 5.6 6.6
I/sigma 5.6 5.1 1.4
Rmerge 0.197 0.117 1.528
CC half 0.992 0.997 0.839
Anomalous completeness 93.6 66.6 96.9
Anomalous multiplicity 3.4 3.4 3.4
Cell 239.93 54.51 164.12 90.0 91.15 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.2142

Sweep:

SWEEP1

Files:

/programs/datagrid/62/uoac_5mM_2_1_#####.cbf

Images:

1 - 1200

Beam:

(226.87, 220.33) -> (226.87, 218.3)

Distance:

500.0 -> 503.65

Spacegroup:

C 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.99 8.1 2.99
Low resolution limit 68.46 68.48 3.04
Completeness 99.8 100.0 95.0
Multiplicity 6.3 6.0 5.5
I/sigma 7.6 17.1 0.9
Rmerge 0.112 0.055 1.681
CC half 0.996 0.997 0.644
Anomalous completeness 99.3 99.8 94.9
Anomalous multiplicity 3.3 3.3 3.3
Cell 137.013 54.575 96.12 90.0 92.108 90.0
This dataset is part of the SBDB Pilot Reference Collection, and has processed intensities available from that collection.

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.