X-Ray Diffraction data from Glucosamine kinase, source of 6HWK structure

Data DOI: 10.15785/SBGRID/615 | ID: 615

Publication DOI: 10.1128/mBio.00239-19

6HWK Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: May 14, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/615

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/615 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/615 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/615 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/615 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 615 ; shasum -c files.sha'

Storage requirements: 5.9G

Biological Sample:

Glucosamine kinase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ESRF ID30A3

Data Creation Date:

March 2, 2017

Related Datasets:

None


Cite this Dataset

Manso, JA; Pereira, PJB. 2019. "X-Ray Diffraction data for: Glucosamine kinase. PDB Code 6HWK", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/615.

Download Citation

Dataset Description

X-Ray Diffraction data from S. jiangxiensis GlcNK, source of 6HWK structure

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro JB PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Jose A MansoData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9677

Sweep:

SWEEP1

Files:

/programs/datagrid/615/GLUK01-115_w1_2_1_master.h5

Images:

1 - 3600

Beam:

(81.67, 77.22) -> (81.67, 76.83)

Distance:

162.51 -> 161.44

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.36 6.4 2.36
Low resolution limit 39.2 39.21 2.4
Completeness 99.2 100.0 99.9
Multiplicity 7.1 7.1 7.4
I/sigma 7.5 26.1 0.9
Rmerge 0.194 0.054 1.93
CC half 0.993 0.998 0.387
Anomalous completeness 98.0 99.3 99.7
Anomalous multiplicity 3.6 3.6 3.6
Cell 58.22 111.23 150.67 90.0 93.21 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9677

Sweep:

SWEEP1

Files:

/programs/datagrid/615/GLUK01-115_w1_2_1_master.h5

Images:

1 - 3600

Beam:

(81.67, 77.22) -> (81.67, 76.83)

Distance:

162.51 -> 161.48

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.41 6.54 2.41
Low resolution limit 51.52 51.53 2.45
Completeness 99.1 100.0 99.9
Multiplicity 7.0 7.1 7.4
I/sigma 7.9 26.4 1.0
Rmerge 0.185 0.054 1.654
CC half 0.993 0.998 0.413
Anomalous completeness 97.9 99.2 99.6
Anomalous multiplicity 3.6 3.6 3.6
Cell 58.22 111.23 150.67 90.0 93.21 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9677

Sweep:

SWEEP1

Files:

/programs/datagrid/615/GLUK01-115_w1_2_1_master.h5

Images:

1 - 3600

Beam:

(81.67, 77.22) -> (81.67, 76.83)

Distance:

162.51 -> 161.51

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.34 6.34 2.34
Low resolution limit 52.14 52.15 2.38
Completeness 99.0 100.0 97.7
Multiplicity 7.1 7.2 7.2
I/sigma 5.5 12.6 1.3
Rmerge 0.33 0.066 3.362
CC half 0.984 0.997 0.284
Anomalous completeness 98.8 99.9 97.1
Anomalous multiplicity 3.6 3.6 3.6
Cell 58.182 111.173 150.642 90.0 93.23 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.