X-Ray Diffraction data from Glucosamine kinase, source of 6HWJ structure

Data DOI: 10.15785/SBGRID/614 | ID: 614

Publication DOI: 10.1128/mBio.00239-19

6HWJ Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Pereira Laboratory, IBMC/i3S, Universidade do Porto

Release Date: May 14, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/614

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/614 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/614 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/614 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/614 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 614 ; shasum -c files.sha'

Storage requirements: 3.5G

Biological Sample:

Glucosamine kinase

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

ALBA BL13-XALOC

Data Creation Date:

Oct. 16, 2016

Related Datasets:

None


Cite this Dataset

Manso, JA; Pereira, PJB. 2019. "X-Ray Diffraction data for: Glucosamine kinase. PDB Code 6HWJ", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/614.

Download Citation

Dataset Description

X-Ray Diffraction data from S. jiangxiensis GlcNK, source of 6HWJ structure

Project Members

Name Additional Roles Affiliation While Working on the Project
Pedro JB PereiraDepositorIBMC - Instituto de Biologia Molecular e Celular
Jose A MansoData CollectorIBMC - Instituto de Biologia Molecular e Celular
Pedro PereiraPIUniversidade do Porto

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/614/bg3006_2_####.cbf

Images:

1 - 600

Beam:

(224.66, 211.77) -> (224.66, 211.88)

Distance:

295.57 -> 294.8

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.86 5.05 1.86
Low resolution limit 96.06 96.19 1.89
Completeness 97.6 98.5 97.3
Multiplicity 3.2 3.2 3.2
I/sigma 8.6 24.2 1.2
Rmerge 0.075 0.025 0.876
CC half 0.997 0.998 0.305
Anomalous completeness 86.4 90.9 84.2
Anomalous multiplicity 1.7 1.7 1.7
Cell 59.798 96.059 80.222 90.0 106.747 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/614/bg3006_2_####.cbf

Images:

1 - 600

Beam:

(224.66, 211.77) -> (224.66, 211.81)

Distance:

295.57 -> 294.02

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.92 5.2 1.92
Low resolution limit 26.98 26.98 1.95
Completeness 98.2 99.2 97.6
Multiplicity 3.4 3.4 3.3
I/sigma 11.9 37.3 1.0
Rmerge 0.049 0.018 0.984
CC half 0.999 0.999 0.415
Anomalous completeness 89.9 92.4 84.1
Anomalous multiplicity 1.8 1.8 1.8
Cell 59.81 96.07 80.25 90.0 106.69 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/614/bg3006_2_####.cbf

Images:

1 - 600

Beam:

(224.66, 211.77) -> (224.66, 211.82)

Distance:

295.57 -> 294.48

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.91 5.18 1.91
Low resolution limit 96.07 96.19 1.94
Completeness 98.1 99.2 96.9
Multiplicity 3.4 3.4 3.4
I/sigma 11.8 37.1 1.0
Rmerge 0.05 0.018 1.066
CC half 0.999 0.999 0.397
Anomalous completeness 90.0 92.5 85.8
Anomalous multiplicity 1.8 1.8 1.8
Cell 59.81 96.07 80.25 90.0 106.69 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 1.0332

Sweep:

SWEEP1

Files:

/programs/datagrid/614/bg3006_2_####.cbf

Images:

1 - 600

Beam:

(224.66, 211.77) -> (224.66, 211.83)

Distance:

295.57 -> 294.62

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.84 4.99 1.84
Low resolution limit 76.88 76.95 1.87
Completeness 97.9 99.4 93.3
Multiplicity 3.4 3.4 3.4
I/sigma 10.8 34.6 1.1
Rmerge 0.057 0.019 1.004
CC half 0.998 0.998 0.396
Anomalous completeness 89.8 94.4 84.8
Anomalous multiplicity 1.8 1.8 1.8
Cell 59.825 96.047 80.26 90.0 106.687 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.