X-Ray Diffraction data from Glycoprotein E2 from bovine viral diarrhea virus, source of 4JNT structure

Data DOI: 10.15785/SBGRID/61 | ID: 61

Publication DOI: 10.1073/pnas.1300524110

4JNT Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Modis Laboratory, University of Cambridge

Release Date: May 7, 2015

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/61

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/61 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/61 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/61 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/61 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 61 ; shasum -c files.sha'

Storage requirements: 3.6G

Biological Sample:

Glycoprotein E2 from bovine viral diarrhea virus

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Beamline X25, NSLS, BNL

Data Creation Date:

Dec. 4, 2012

Related Datasets:

None


Cite this Dataset

Li, Y; Wang, J; Modis, Y. 2015. "X-Ray Diffraction data for: Glycoprotein E2 from bovine viral diarrhea virus. PDB Code 4JNT", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/61.

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Dataset Description

Native, full-length ectodomain (domains I-III)

Project Members

Name Additional Roles Affiliation While Working on the Project
Yue LiData CollectorYale University
Jimin WangData CollectorYale University
Yorgo ModisDepositor, PIUniversity of Cambridge

Reprocessing Instructions

Use XDS for best results due to anisotropy of diffraction.

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97918

Sweep:

SWEEP1

Files:

/programs/datagrid/61/122_04_1_###.img

Images:

1 - 200

Beam:

(157.18, 156.39) -> (157.18, 156.31)

Distance:

400.0 -> 398.97

Spacegroup:

P 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 5.86 15.8 5.86
Low resolution limit 59.98 59.98 5.96
Completeness 97.5 95.0 89.0
Multiplicity 2.1 2.0 2.1
I/sigma 3.6 5.5 1.9
Rmerge 0.057 0.061 0.1
CC half 0.993 0.983 0.975
Anomalous completeness 89.7 80.3 79.5
Anomalous multiplicity 1.1 1.1 1.1
Cell 67.474 83.995 122.101 85.309 74.122 66.31

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.