X-Ray Diffraction data from GspB Siglec + Unique domains, source of 6EFA structure

Data DOI: 10.15785/SBGRID/604 | ID: 604

6EFA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Iverson Laboratory, Vanderbilt University

Release Date: Jan. 4, 2022

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/604

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/604 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/604 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/604 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/604 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 604 ; shasum -c files.sha'

Storage requirements: 3.6G

Biological Sample:

GspB Siglec + Unique domains

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

Advanced Photon Source 21-ID-F

Data Creation Date:

March 14, 2015

Related Datasets:

None


Cite this Dataset

Loukachevitch, LV; Iverson, T. 2022. "X-Ray Diffraction data for: GspB Siglec + Unique domains. PDB Code 6EFA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/604.

Download Citation

Dataset Description

GspB isolated Siglec and Unique domains

Project Members

Name Additional Roles Affiliation While Working on the Project
Tina IversonDepositorVanderbilt
Lioudmila V LoukachevitchData CollectorVanderbilt
Tina IversonPIVanderbilt University

Reprocessing Instructions

none

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/604/gspbsu_2.###

Images:

1 - 200

Beam:

(112.37, 111.99) -> (112.37, 112.01)

Distance:

180.0 -> 179.76

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.54 4.18 1.54
Low resolution limit 38.97 38.98 1.57
Completeness 93.0 100.0 61.1
Multiplicity 7.0 7.1 3.8
I/sigma 14.6 44.1 0.6
Rmerge 0.079 0.028 1.709
CC half 0.999 0.999 0.28
Anomalous completeness 91.6 99.8 56.5
Anomalous multiplicity 3.8 3.8 3.8
Cell 32.95 47.54 136.08 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/604/gspbsu_2.###

Images:

1 - 200

Beam:

(112.37, 111.99) -> (112.37, 112.01)

Distance:

180.0 -> 179.71

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.54 4.18 1.54
Low resolution limit 47.54 47.56 1.57
Completeness 93.0 100.0 61.0
Multiplicity 7.0 7.1 3.8
I/sigma 14.6 44.1 0.6
Rmerge 0.079 0.028 1.71
CC half 0.999 0.999 0.282
Anomalous completeness 91.6 99.8 56.5
Anomalous multiplicity 3.8 3.8 3.8
Cell 32.95 47.54 136.08 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97872

Sweep:

SWEEP1

Files:

/programs/datagrid/604/gspbsu_2.###

Images:

1 - 200

Beam:

(112.37, 111.99) -> (112.37, 112.08)

Distance:

180.0 -> 179.72

Spacegroup:

P 1 2 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.73 4.69 1.73
Low resolution limit 68.02 68.07 1.76
Completeness 99.6 100.0 93.1
Multiplicity 4.1 4.0 3.4
I/sigma 13.6 59.0 3.1
Rmerge 0.108 0.051 0.928
CC half 0.925 0.961 0.033
Anomalous completeness 98.7 100.0 88.4
Anomalous multiplicity 2.1 2.1 2.1
Cell 47.546 32.939 136.044 90.0 89.985 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.