Data DOI: 10.15785/SBGRID/604 | ID: 604
6EFA Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Iverson Laboratory, Vanderbilt University
Release Date: 4 Jan 2022
1. If this dataset is locally available, it should be accessable at /programs/datagrid/604
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/604 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/604 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/604 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/604 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 604 ; shasum -c files.sha'
Storage requirements: 3.6G
Biological Sample:
GspB Siglec + Unique domains
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
Advanced Photon Source 21-ID-F
Data Creation Date:
14 Mar 2015
Related Datasets:
None
Loukachevitch, LV; Iverson, T. 2022. "X-Ray Diffraction data for: GspB Siglec + Unique domains. PDB Code 6EFA", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/604.
GspB isolated Siglec and Unique domains
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Tina Iverson | Depositor | Vanderbilt |
| Lioudmila V Loukachevitch | Data Collector | Vanderbilt |
| Tina Iverson | PI | Vanderbilt University |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/604/gspbsu_2.###
Images:
1 - 200
Beam:
(112.37, 111.99) -> (112.37, 112.01)
Distance:
180.0 -> 179.76
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.54 | 4.18 | 1.54 |
| Low resolution limit | 38.97 | 38.98 | 1.57 |
| Completeness | 93.0 | 100.0 | 61.1 |
| Multiplicity | 7.0 | 7.1 | 3.8 |
| I/sigma | 14.6 | 44.1 | 0.6 |
| Rmerge | 0.079 | 0.028 | 1.709 |
| CC half | 0.999 | 0.999 | 0.28 |
| Anomalous completeness | 91.6 | 99.8 | 56.5 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 32.95 | 47.54 | 136.08 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/604/gspbsu_2.###
Images:
1 - 200
Beam:
(112.37, 111.99) -> (112.37, 112.01)
Distance:
180.0 -> 179.71
Spacegroup:
P 21 21 21
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.54 | 4.18 | 1.54 |
| Low resolution limit | 47.54 | 47.56 | 1.57 |
| Completeness | 93.0 | 100.0 | 61.0 |
| Multiplicity | 7.0 | 7.1 | 3.8 |
| I/sigma | 14.6 | 44.1 | 0.6 |
| Rmerge | 0.079 | 0.028 | 1.71 |
| CC half | 0.999 | 0.999 | 0.282 |
| Anomalous completeness | 91.6 | 99.8 | 56.5 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 32.95 | 47.54 | 136.08 | 90.0 | 90.0 | 90.0 |
|---|
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.97872
Sweep:
SWEEP1
Files:
/programs/datagrid/604/gspbsu_2.###
Images:
1 - 200
Beam:
(112.37, 111.99) -> (112.37, 112.08)
Distance:
180.0 -> 179.72
Spacegroup:
P 1 2 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.73 | 4.69 | 1.73 |
| Low resolution limit | 68.02 | 68.07 | 1.76 |
| Completeness | 99.6 | 100.0 | 93.1 |
| Multiplicity | 4.1 | 4.0 | 3.4 |
| I/sigma | 13.6 | 59.0 | 3.1 |
| Rmerge | 0.108 | 0.051 | 0.928 |
| CC half | 0.925 | 0.961 | 0.033 |
| Anomalous completeness | 98.7 | 100.0 | 88.4 |
| Anomalous multiplicity | 2.1 | 2.1 | 2.1 |
| Cell | 47.546 | 32.939 | 136.044 | 90.0 | 89.985 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
