X-Ray Diffraction data from neoleukin-2/15, source of 6DG6 structure

Data DOI: 10.15785/SBGRID/587 | ID: 587

Publication DOI: 10.1038/s41586-018-0830-7

6DG6 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Garcia Laboratory, Stanford University

Release Date: Jan. 11, 2019

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/587

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/587 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/587 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/587 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/587 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 587 ; shasum -c files.sha'

Storage requirements: 11G

Biological Sample:

neoleukin-2/15

Dataset Type:

X-Ray Diffraction

Subject Composition:

Protein

Collection Facility:

beamline 12-2, SSRL

Data Creation Date:

July 23, 2017

Related Datasets:

None


Cite this Dataset

Jude, KM; Garcia, KC; Garcia, K. 2019. "X-Ray Diffraction data for: neoleukin-2/15. PDB Code 6DG6", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/587.

Download Citation

Dataset Description

native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Kevin M JudeData Collector, DepositorStanford University/Howard Hughes Medical Institute
K C GarciaStanford University/Howard Hughes Medical Institute
K. Christopher GarciaPIStanford University

Reprocessing Instructions

first 1195 images processed with XDS

Reprocessing Data

About Reprocessing

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/587/S11_A7_6_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 212.03)

Distance:

350.0 -> 349.84

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.91 5.18 1.91
Low resolution limit 92.27 92.38 1.94
Completeness 99.5 99.8 100.0
Multiplicity 12.0 11.9 12.2
I/sigma 9.8 27.7 1.2
Rmerge 0.177 0.061 2.403
CC half 0.998 0.999 0.333
Anomalous completeness 99.6 99.3 99.9
Anomalous multiplicity 6.3 6.3 6.3
Cell 73.694 86.72 92.268 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/587/S11_A7_6_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.94)

Distance:

350.0 -> 349.9

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.02 5.47 2.02
Low resolution limit 29.02 29.02 2.05
Completeness 99.9 100.0 99.8
Multiplicity 13.1 11.8 12.1
I/sigma 13.1 37.8 1.2
Rmerge 0.111 0.045 2.114
CC half 0.999 0.999 0.534
Anomalous completeness 99.8 99.6 99.4
Anomalous multiplicity 6.9 6.9 6.9
Cell 73.74 86.89 92.37 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/587/S11_A7_6_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.94)

Distance:

350.0 -> 349.55

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.02 5.48 2.02
Low resolution limit 36.87 36.88 2.05
Completeness 99.9 100.0 99.8
Multiplicity 13.1 11.8 12.1
I/sigma 13.1 37.7 1.2
Rmerge 0.11 0.045 2.115
CC half 0.999 0.999 0.533
Anomalous completeness 99.8 99.6 99.3
Anomalous multiplicity 6.9 6.9 6.9
Cell 73.74 86.89 92.37 90.0 90.0 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.97946

Sweep:

SWEEP1

Files:

/programs/datagrid/587/S11_A7_6_#####.cbf

Images:

1 - 1800

Beam:

(217.32, 211.82) -> (217.32, 211.94)

Distance:

350.0 -> 349.61

Spacegroup:

P 21 21 21

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.93 5.23 1.93
Low resolution limit 40.77 40.78 1.96
Completeness 99.7 100.0 97.6
Multiplicity 12.9 12.5 13.0
I/sigma 10.4 27.3 1.0
Rmerge 0.144 0.056 2.936
CC half 0.999 0.999 0.505
Anomalous completeness 99.8 99.8 97.7
Anomalous multiplicity 6.8 6.8 6.8
Cell 73.708 86.903 92.32 90.0 90.0 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.