Data DOI: 10.15785/SBGRID/584 | ID: 584
Publication DOI: 10.7554/eLife.40372
6DD9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Corbett Laboratory, University of California, San Diego
Release Date: 25 Jan 2019
1. If this dataset is locally available, it should be accessable at /programs/datagrid/584
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/584 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/584 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/584 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/584 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 584 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
M. musculus SYCP3 residues 105-248
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 24ID-C
Data Creation Date:
23 Aug 2017
Related Datasets:
None
Rosenberg, SC; Corbett, KD. 2019. "X-Ray Diffraction data for: M. musculus SYCP3 residues 105-248. PDB Code 6DD9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/584.
Selenomethionine SAD dataset for M. musculus SYCP3 105-248, P1 crystal form
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin D Corbett | Depositor | UC San Diego |
| Scott C Rosenberg | Data Collector | UC San Diego |
| Kevin Corbett | PI | University of California, San Diego |
none
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.92
Sweep:
SWEEP1
Files:
/programs/datagrid/584/14_8_1_####.cbf
Images:
1 - 1800
Beam:
(216.75, 223.03) -> (216.75, 223.09)
Distance:
400.0 -> 398.19
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.96 | 5.31 | 1.96 |
| Low resolution limit | 33.14 | 33.14 | 1.99 |
| Completeness | 94.8 | 94.3 | 96.0 |
| Multiplicity | 7.2 | 7.0 | 7.3 |
| I/sigma | 8.1 | 29.4 | 0.4 |
| Rmerge | 0.116 | 0.044 | 4.262 |
| CC half | 0.996 | 0.999 | 0.372 |
| Anomalous completeness | 89.9 | 90.1 | 90.0 |
| Anomalous multiplicity | 3.7 | 3.7 | 3.7 |
| Cell | 45.88 | 52.3 | 75.62 | 95.17 | 103.69 | 110.55 |
|---|
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 0.92
Sweep:
SWEEP1
Files:
/programs/datagrid/584/14_8_1_####.cbf
Images:
1 - 1800
Beam:
(216.75, 223.03) -> (216.75, 223.08)
Distance:
400.0 -> 400.5
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 1.78 | 4.84 | 1.78 |
| Low resolution limit | 72.29 | 72.35 | 1.81 |
| Completeness | 90.9 | 92.3 | 62.1 |
| Multiplicity | 7.3 | 7.4 | 6.7 |
| I/sigma | 4.1 | 25.7 | 0.4 |
| Rmerge | 0.157 | 0.073 | 6.026 |
| CC half | 0.993 | 0.993 | 0.223 |
| Anomalous completeness | 84.0 | 86.7 | 49.6 |
| Anomalous multiplicity | 3.8 | 3.8 | 3.8 |
| Cell | 46.055 | 52.494 | 75.808 | 95.092 | 103.784 | 110.491 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
