Data DOI: 10.15785/SBGRID/582 | ID: 582
Publication DOI: 10.7554/eLife.35850
5WB2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: June 8, 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/582
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/582 .'
(Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/582 .'
(Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/582 .'
(Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/582 .'
(Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 582 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
complex of engineered human chemokine CX3CL1 with viral US28 and two nanobodies
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 23 ID-D
Data Creation Date:
Aug. 7, 2016
Related Datasets:
None
Jude, KM; Garcia, KC; Tsutsumi, N; Garcia, K. 2018. "X-Ray Diffraction data for: complex of engineered human chemokine CX3CL1 with viral US28 and two nanobodies. PDB Code 5WB2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/582.
datasets merged from 2 crystals
Name | Additional Roles | Affiliation While Working on the Project |
---|---|---|
Kevin M Jude | Data Collector, Depositor | Stanford University/Howard Hughes Medical Institute |
K C Garcia | Stanford University/Howard Hughes Medical Institute | |
Naotaka Tsutsumi | Data Collector | Stanford University |
K. Christopher Garcia | PI | Stanford University |
used xds to process first 200 frames of 0344B3_5_?????.cbf and frames 450-1050 of 0343D3_1_?????.cbf and merged with xscale
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03323
Sweep:
SWEEP2
Files:
/programs/datagrid/582/0344B3_5_#####.cbf
Images:
1 - 1800
Beam:
(221.54, 214.48) -> (221.54, 214.92)
Distance:
450.0 -> 451.3
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
ALL | LOW | HIGH | |
---|---|---|---|
High resolution limit | 7.04 | 18.94 | 7.04 |
Low resolution limit | 63.6 | 63.6 | 7.16 |
Completeness | 98.9 | 98.7 | 84.4 |
Multiplicity | 5.4 | 7.2 | 3.7 |
I/sigma | 3.3 | 6.1 | 1.6 |
Rmerge | 0.635 | 0.309 | 1.458 |
CC half | 0.615 | 0.981 | 0.313 |
Anomalous completeness | 95.7 | 94.9 | 80.7 |
Anomalous multiplicity | 2.7 | 2.7 | 2.7 |
Cell | 47.423 | 127.195 | 128.646 | 89.837 | 90.053 | 89.754 |
---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.