Data DOI: 10.15785/SBGRID/582 | ID: 582
5WB2 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 8 Jun 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/582
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/582 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/582 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/582 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/582 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 582 ; shasum -c files.sha'
Storage requirements: 21G
Biological Sample:
complex of engineered human chemokine CX3CL1 with viral US28 and two nanobodies
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 23 ID-D
Data Creation Date:
7 Aug 2016
Related Datasets:
None
Jude, KM; Garcia, KC; Tsutsumi, N; Garcia, K. 2018. "X-Ray Diffraction data for: complex of engineered human chemokine CX3CL1 with viral US28 and two nanobodies. PDB Code 5WB2", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/582.
datasets merged from 2 crystals
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Data Collector, Depositor | Stanford University/Howard Hughes Medical Institute |
| K C Garcia | Stanford University/Howard Hughes Medical Institute | |
| Naotaka Tsutsumi | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
used xds to process first 200 frames of 0344B3_5_?????.cbf and frames 450-1050 of 0343D3_1_?????.cbf and merged with xscale
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.03323
Sweep:
SWEEP2
Files:
/programs/datagrid/582/0344B3_5_#####.cbf
Images:
1 - 1800
Beam:
(221.54, 214.48) -> (221.54, 214.92)
Distance:
450.0 -> 451.3
Spacegroup:
P 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.03 | 8.23 | 3.03 |
| Low resolution limit | 64.33 | 64.34 | 3.09 |
| Completeness | 98.3 | 97.5 | 84.4 |
| Multiplicity | 3.1 | 4.9 | 2.6 |
| I/sigma | 3.0 | 27.6 | 0.6 |
| Rmerge | 1.0 | 0.325 | 1.0 |
| CC half | 0.0 | 0.119 | -0.003 |
| Anomalous completeness | 91.8 | 94.2 | 75.3 |
| Anomalous multiplicity | 1.6 | 1.6 | 1.6 |
| Cell | 47.423 | 127.248 | 128.656 | 89.838 | 90.05 | 89.741 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
