Data DOI: 10.15785/SBGRID/581 | ID: 581
Publication DOI: 10.7554/eLife.35850
5WB1 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB
Garcia Laboratory, Stanford University
Release Date: 8 Jun 2018
1. If this dataset is locally available, it should be accessable at /programs/datagrid/581
2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:
'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/581 .' (Harvard Medical School, USA)
Depending on your location, faster access may be available from a Tier 1 site closer to your location
'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/581 .' (Uppsala University, Sweden)
'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/581 .' (Institut Pasteur de Montevideo, Uruguay)
'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/581 .' (Shanghai Institutes for Biological Sciences, China)
3. After the transfer is completed, please issue the following command to verify data integrity:
'cd 581 ; shasum -c files.sha'
Storage requirements: 11G
Biological Sample:
single chain complex of viral US28 with stabilizing nanobody nb7
Dataset Type:
X-Ray Diffraction
Subject Composition:
Protein
Collection Facility:
APS 23 ID-D
Data Creation Date:
20 Apr 2015
Related Datasets:
None
Jude, KM; Burg, JS; Garcia, K. 2018. "X-Ray Diffraction data for: single chain complex of viral US28 with stabilizing nanobody nb7. PDB Code 5WB1", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/581.
merged data from 2 crystals
| Name | Additional Roles | Affiliation While Working on the Project |
|---|---|---|
| Kevin M Jude | Data Collector, Depositor | Stanford University/Howard Hughes Medical Institute |
| John S Burg | Data Collector | Stanford University |
| K. Christopher Garcia | PI | Stanford University |
datasets were processed separately with xds and merged with xscale
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP2
Files:
/programs/datagrid/581/E2_1_#####.cbf
Images:
1 - 900
Beam:
(219.82, 218.44) -> (219.82, 219.61)
Distance:
650.0 -> 647.15
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.25 | 8.79 | 3.25 |
| Low resolution limit | 38.33 | 38.33 | 3.31 |
| Completeness | 100.0 | 100.0 | 99.8 |
| Multiplicity | 6.2 | 5.4 | 3.5 |
| I/sigma | 5.7 | 21.2 | 0.4 |
| Rmerge | 0.189 | 0.053 | 2.049 |
| CC half | 0.997 | 0.997 | 0.407 |
| Anomalous completeness | 99.3 | 100.0 | 95.7 |
| Anomalous multiplicity | 3.3 | 3.3 | 3.3 |
| Cell | 77.44 | 38.33 | 99.69 | 90.0 | 107.49 | 90.0 |
|---|
Version:
version unreported
Reprocessing failed.
Version:
version unreported
Project:
AUTOMATIC
Crystal:
DEFAULT
Sequence Length:
0
Wavelength:
SAD - 1.0332
Sweep:
SWEEP2
Files:
/programs/datagrid/581/E2_1_#####.cbf
Images:
1 - 900
Beam:
(219.82, 218.44) -> (219.82, 219.62)
Distance:
650.0 -> 649.32
Spacegroup:
P 1 21 1
For AUTOMATIC/DEFAULT/SAD:
| ALL | LOW | HIGH | |
|---|---|---|---|
| High resolution limit | 3.13 | 8.49 | 3.13 |
| Low resolution limit | 73.89 | 73.91 | 3.19 |
| Completeness | 100.0 | 100.0 | 98.6 |
| Multiplicity | 6.5 | 5.8 | 5.4 |
| I/sigma | 6.9 | 35.7 | 0.4 |
| Rmerge | 0.2 | 0.053 | 2.736 |
| CC half | 0.996 | 0.998 | 0.392 |
| Anomalous completeness | 99.7 | 100.0 | 95.5 |
| Anomalous multiplicity | 3.5 | 3.5 | 3.5 |
| Cell | 77.453 | 38.304 | 99.653 | 90.0 | 107.449 | 90.0 |
|---|
License: CC0
Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.
