X-Ray Diffraction data from human Dcytb in complex with Zn and ascorbate, source of 5ZLG structure

Data DOI: 10.15785/SBGRID/574 | ID: 574

Publication DOI: 10.1038/s42003-018-0121-8

5ZLG Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shiro Laboratory, University of Hyogo

Release Date: Aug. 17, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/574

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/574 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/574 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/574 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/574 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 574 ; shasum -c files.sha'

Storage requirements: 262G

Biological Sample:

human Dcytb in complex with Zn and ascorbate

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

SPring-8 beamline BL32XU

Data Creation Date:

Dec. 1, 2016

Related Datasets:


Cite this Dataset

Yamashita, K; Ganasen, M; Mauk, GA; Sawai, H; Sugimoto, H; Togashi, H; Shiro, Y. 2018. "X-Ray Diffraction data for: human Dcytb in complex with Zn and ascorbate. PDB Code 5ZLG", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/574.

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Dataset Description

Small-wedge (5 degrees/crystal) data collected using 5x5 um beam

Project Members

Name Additional Roles Affiliation While Working on the Project
Keitaro YamashitaDepositorRIKEN SPring-8 Center
Menega GanasenUniversity of Hyogo
Grant A MaukUniversity of British Columbia
Hitomi SawaiUniversity of Hyogo
Hiroshi SugimotoData CollectorRIKEN SPring-8 Center
Hiromi TogashiRIKEN SPring-8 Center
Yoshitsugu ShiroPIUniversity of Hyogo

Reprocessing Instructions

600 datasets were merged at 2.8 Å resolution in the published result using KAMO (XDS/XSCALE used for integration/merging); see https://github.com/keitaroyam/yamtbx/wiki/Processing-Dcytb-data-(5ZLE-&-5ZLG)

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.