X-Ray Diffraction data from human Dcytb in substrate-free form, source of 5ZLE structure

Data DOI: 10.15785/SBGRID/573 | ID: 573

Publication DOI: 10.1038/s42003-018-0121-8

5ZLE Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Shiro Laboratory, University of Hyogo

Release Date: Aug. 17, 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/573

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/573 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/573 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/573 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/573 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 573 ; shasum -c files.sha'

Storage requirements: 124G

Biological Sample:

human Dcytb in substrate-free form

Dataset Type:

X-Ray Diffraction

Subject Composition:


Collection Facility:

SPring-8 beamline BL32XU

Data Creation Date:

July 22, 2016

Related Datasets:


Cite this Dataset

Yamashita, K; Ganasen, M; Mauk, GA; Sawai, H; Sugimoto, H; Togashi, H; Shiro, Y. 2018. "X-Ray Diffraction data for: human Dcytb in substrate-free form. PDB Code 5ZLE", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/573.

Download Citation

Dataset Description

Small-wedge (5 degrees/crystal) data collected using 5x5 um beam

Project Members

Name Additional Roles Affiliation While Working on the Project
Keitaro YamashitaDepositorRIKEN SPring-8 Center
Menega GanasenUniversity of Hyogo
Grant A MaukUniversity of British Columbia
Hitomi SawaiUniversity of Hyogo
Hiroshi SugimotoData CollectorRIKEN SPring-8 Center
Hiromi TogashiRIKEN SPring-8 Center
Yoshitsugu ShiroPIUniversity of Hyogo

Reprocessing Instructions

866 datasets were merged at 2.6 Å resolution in the published result using KAMO (XDS/XSCALE used for integration/merging); see https://github.com/keitaroyam/yamtbx/wiki/Processing-Dcytb-data-(5ZLE-&-5ZLG)

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.