X-Ray Diffraction data from Human beta-defensin 2, source of 6CS9 structure

Data DOI: 10.15785/SBGRID/568 | ID: 568

Publication DOI: 10.1126/sciadv.aat0979

6CS9 Coordinates: Viewer, PDB (RCSB) (PDBe), MMDB

Kvansakul Laboratory, La Trobe University

Release Date: 27 Jul 2018

Data Access Instructions

1. If this dataset is locally available, it should be accessable at /programs/datagrid/568

2. To download this dataset, please run the following command from your Terminal on a Linux or OS X workstation:

'rsync -av rsync://data.sbgrid.org/10.15785/SBGRID/568 .' (Harvard Medical School, USA)

Depending on your location, faster access may be available from a Tier 1 site closer to your location

'rsync -av rsync://sbgrid.icm.uu.se/10.15785/SBGRID/568 .' (Uppsala University, Sweden)

'rsync -av rsync://sbgrid.pasteur.edu.uy/10.15785/SBGRID/568 .' (Institut Pasteur de Montevideo, Uruguay)

'rsync -av rsync://sbgrid.ncpss.org/10.15785/SBGRID/568 .' (Shanghai Institutes for Biological Sciences, China)

3. After the transfer is completed, please issue the following command to verify data integrity:

'cd 568 ; shasum -c files.sha'

Storage requirements: 3.7G

Biological Sample:

Human beta-defensin 2

Dataset Type:

X-Ray Diffraction

Subject Composition:

Ligand, Protein

Collection Facility:

Australian Synchrotron - MX2

Data Creation Date:

20 Jul 2016

Related Datasets:

None


Cite this Dataset

Jarva, M; Hulett, M; Lay, FT; Phan, T; Kvansakul, M. 2018. "X-Ray Diffraction data for: Human beta-defensin 2. PDB Code 6CS9", SBGrid Data Bank, V1, https://doi.org/10.15785/SBGRID/568.

Download Citation

Dataset Description

Native dataset

Project Members

Name Additional Roles Affiliation While Working on the Project
Michael JarvaData Collector, DepositorLa Trobe University
Mark HulettLa Trobe University
Fung T LayLa Trobe University
Thanh Kha PhanLa Trobe University
Marc KvansakulData Collector, PILa Trobe University

Reprocessing Instructions

Processed in XDS and merged in aimless.

Reprocessing Data

About Reprocessing

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Reprocessing failed.

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9537

Sweep:

SWEEP1

Files:

/programs/datagrid/568/HBD2D7_2_1_###.img

Images:

1 - 210

Beam:

(158.81, 157.73) -> (158.81, 157.76)

Distance:

300.02 -> 300.49

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 2.24 6.07 2.24
Low resolution limit 39.45 39.46 2.28
Completeness 95.6 95.3 96.2
Multiplicity 4.2 3.8 4.3
I/sigma 3.8 7.7 1.4
Rmerge 0.205 0.063 0.997
CC half 0.991 0.997 0.639
Anomalous completeness 92.1 90.8 93.1
Anomalous multiplicity 2.3 2.3 2.3
Cell 55.58 25.53 143.41 90.0 100.83 90.0

Version:

version unreported

Project:

AUTOMATIC

Crystal:

DEFAULT

Sequence Length:

0

Wavelength:

SAD - 0.9537

Sweep:

SWEEP1

Files:

/programs/datagrid/568/HBD2D7_2_1_###.img

Images:

1 - 210

Beam:

(158.81, 157.73) -> (158.81, 157.75)

Distance:

300.02 -> 300.3

Spacegroup:

P 1 21 1

For AUTOMATIC/DEFAULT/SAD:

ALL LOW HIGH
High resolution limit 1.8 4.88 1.8
Low resolution limit 25.59 25.59 1.83
Completeness 80.9 100.0 3.1
Multiplicity 3.5 3.8 1.0
I/sigma 8.8 21.8 0.6
Rmerge 0.064 0.033 0.0
CC half 0.998 0.999 0.0
Anomalous completeness 69.8 100.0 0.0
Anomalous multiplicity 2.0 2.0 2.0
Cell 32.916 25.587 40.234 90.0 98.588 90.0

License and Terms of use

License: CC0

Terms: Our Community Norms as well as good scientific practices expect that proper credit is given via citation. Please use the data citation, as generated by the SBGrid Data Bank.